PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09911_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 397aa    MW: 43545.2 Da    PI: 9.5658
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09911_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP150.88.8e-47982552133
                         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 
                                 a+kkdrhski+T++g RdRRvRls+e+a++fFdLqd+LGfdk+skt+eWLl++++ ai el++ +   +  c   ++s s + 
  Cotton_A_09911_BGI-A2_v1.0  98 AVKKDRHSKICTAQGVRDRRVRLSIEIAREFFDLQDMLGFDKASKTVEWLLRKSNNAIRELVKMKRHGN-GCpGGQRSFSLVP 179
                                 89**************************************************************33333.5532222222222 PP

                         TCP  84 nsssg...........................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                                  ++ +                           +   s+ k+ k+ ++aa +  lakesrakarararertrekm+  
  Cotton_A_09911_BGI-A2_v1.0 180 DDQYEmvaengalgvdggefegtafqsnllelEGVVSKDKKMKNLHKAA-VPLLAKESRAKARARARERTREKMCSG 255
                                 2222234444456678888888999999999866666666666666666.799**********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.2E-4499253IPR005333Transcription factor, TCP
PROSITE profilePS5136935.588100158IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.483234251IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MFFSTSANDY NNINPFLHFP SSSYHPQALP PPPPPLLSHE SNGILLNHHH HHHDLVSASS  60
LLPANPQLTD TLLNMALLNK DGVGFGGPPG FGFPVNKAVK KDRHSKICTA QGVRDRRVRL  120
SIEIAREFFD LQDMLGFDKA SKTVEWLLRK SNNAIRELVK MKRHGNGCPG GQRSFSLVPD  180
DQYEMVAENG ALGVDGGEFE GTAFQSNLLE LEGVVSKDKK MKNLHKAAVP LLAKESRAKA  240
RARARERTRE KMCSGSGSST SRHEWKICPD SSPHFLRSLS QLEPTKKSDH SYGHNSSSMA  300
SSFKVVAHQV EEPSAASRDN VIEESLMIRR MLKPSAILGF QQNLATSKDA SCNSSGNNGF  360
PNLSQKWDIN GAMAHSTLCA VTTNVNLSTG VQLYGKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624696.10.0PREDICTED: transcription factor DICHOTOMA-like
TrEMBLA0A1U8PBY50.0A0A1U8PBY5_GOSHI; transcription factor CYCLOIDEA-like
STRINGGorai.001G200400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-29TCP family protein