PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09820_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 456aa    MW: 51735.6 Da    PI: 6.8361
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09820_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322.1e-1093115426
                                 ---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                 e+C+f++++G Ck+G+ CkF+H+
  Cotton_A_09820_BGI-A2_v1.0  93 ENCSFYLKSGNCKFGSCCKFNHP 115
                                 89********************8 PP
2zf-CCCH25.13.2e-08138159526
                                 --SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                 +C+++++tG CkyG+ C++ H+
  Cotton_A_09820_BGI-A2_v1.0 138 ECKYYRATGGCKYGNACRYRHS 159
                                 8******************997 PP
3zf-CCCH22.71.8e-07198220527
                                 --SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                                 +C++++  G CkyG  C+++H++
  Cotton_A_09820_BGI-A2_v1.0 198 ECKYYLSPGGCKYGKACRYSHSK 220
                                 7********************95 PP
4zf-CCCH36.21e-11248270426
                                 ---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                 ++C++++r+G C yG++C+F+H+
  Cotton_A_09820_BGI-A2_v1.0 248 KECPYYMRNGSCAYGSSCRFNHP 270
                                 68********************9 PP
5zf-CCCH32.11.9e-10384410127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                 +++++C++f++tG Cky + CkF+H++
  Cotton_A_09820_BGI-A2_v1.0 384 PGEPECPYFMKTGSCKYKSACKFHHPK 410
                                 5799*********************96 PP
6zf-CCCH23.59.7e-08427453127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                 +++++C ++ ++G+CkyG+ C F+H++
  Cotton_A_09820_BGI-A2_v1.0 427 PDRRICWNYEKSGICKYGSICYFHHPE 453
                                 5799*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.80789117IPR000571Zinc finger, CCCH-type
SMARTSM003560.1389116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-592117IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-693115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54133161IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-4134160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6137163IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-6138159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-7139163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577193221IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021193220IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-6198220IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5198224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-5199221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802244272IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5246271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6247272IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9248270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5250269IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5383410IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.427383411IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-8385410IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5388412IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-5389409IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.962426454IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6427454IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-5428453IPR000571Zinc finger, CCCH-type
SMARTSM003560.29428453IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MGSYEEHSPV LRETPNETQP ESLSGFNSNT LLSNLYPGRE KQEESIVRDL RSVTLEENDW  60
NGYGDNNNNS NENLQVEWQN GKNYQYPLRP YAENCSFYLK SGNCKFGSCC KFNHPIPRTI  120
KDKENHLGLA TDQKRQIECK YYRATGGCKY GNACRYRHSN EDYVLAPLEV NSLALPFQVD  180
INEKSEKDGF AEQTGQIECK YYLSPGGCKY GKACRYSHSK EKSRYLEKSE LPPPELNFLG  240
LPIRMLEKEC PYYMRNGSCA YGSSCRFNHP DPTAAEGSST FRLDPSGSGD HSPGNYNGGS  300
DALPSTEPTA PSLSLNMMSN EHLKCLNQNS AYAHGVHANS EWSGHQEKTS DPYLAPSIDK  360
EIKTLDISEL HQEQIQVHEF PERPGEPECP YFMKTGSCKY KSACKFHHPK TRLPKPILSN  420
AGLPLRPDRR ICWNYEKSGI CKYGSICYFH HPENLF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017608554.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like
TrEMBLA0A2P5Y4E70.0A0A2P5Y4E7_GOSBA; Uncharacterized protein
STRINGGorai.006G036900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1808379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-70C3H family protein