PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_09802_BGI-A2_v1.0 | ||||||||
Common Name | F383_01656 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 243aa MW: 26721.1 Da PI: 9.2773 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.4 | 2.8e-19 | 93 | 147 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k Cotton_A_09802_BGI-A2_v1.0 93 RKKLRLSKEQSSLLEESFKQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTK 147 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 126.3 | 1.4e-40 | 93 | 182 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +kk+rlskeq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk++y++l++en+rL+ke Cotton_A_09802_BGI-A2_v1.0 93 RKKLRLSKEQSSLLEESFKQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKE 175 69********************************************************************************* PP HD-ZIP_I/II 84 veeLreel 91 v+eL+ +l Cotton_A_09802_BGI-A2_v1.0 176 VQELK-AL 182 ****9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.329 | 89 | 149 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.27E-18 | 91 | 158 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.0E-16 | 91 | 153 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.29E-18 | 93 | 150 | No hit | No description |
Pfam | PF00046 | 1.3E-16 | 93 | 147 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 93 | 147 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 124 | 147 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.5E-22 | 149 | 192 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 5.0E-11 | 149 | 183 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGVDDSCNTG LVLSLGFSST LQTPSKPYNK NPSFLKLEPN DEPSLTLALS GVAGGVKPAS 60 PLSGVSSFSS GNKPKREREL SSDEDEEGTV NGRKKLRLSK EQSSLLEESF KQHSTLNPKQ 120 KQALARQLNL KPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK CYETLTDENR RLQKEVQELK 180 ALKLAAHPFH MQAATLTICP SCERTAAAGG VSDGDGNSKN LFSLASKTHH FYNNPLTNPS 240 AAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 149 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX583476 | 2e-52 | JX583476.1 Gossypium hirsutum clone NBRI_GE16526 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017625598.1 | 1e-179 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 5e-83 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A0B0NF71 | 1e-178 | A0A0B0NF71_GOSAR; Homeobox-leucine zipper HAT22-like protein | ||||
STRING | Gorai.003G033400.1 | 1e-172 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1671 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-59 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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