PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09791_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 553aa    MW: 60527.4 Da    PI: 8.2232
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09791_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.82.3e-24202246145
                         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Cotton_A_09791_BGI-A2_v1.0 202 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 246
                                 79****************************************985 PP

2QLQ49.51.3e-17134168337
                         QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                 +T++Q+ +L +Q+l+yKy+++n+PvP++Ll +++k
  Cotton_A_09791_BGI-A2_v1.0 134 LTPSQWIELQHQALIYKYIMSNVPVPSNLLTPLKK 168
                                 8******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.5E-8132168IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.511133168IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.1E-12134166IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.287202246IPR014977WRC domain
PfamPF088796.9E-21203245IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MDFGVLGLDG IVGPNNGAPS PSPPVESKPK LFGSGFTKQE RSSDSAEEED HWKSCKVPKT  60
MPLHQGIPLL RSNETPQQQQ DHMISFSSLK SALPFIRKDG NFMEKTTQSN DFSMYTRNAG  120
YGSGNLNATM HGVLTPSQWI ELQHQALIYK YIMSNVPVPS NLLTPLKKSL YPYGFTSSSV  180
GSLPYNSLGW GSFHLRYTGS TDPEPGRCRR TDGKKWRCSR DAVADQKYCE RHINRGRHRS  240
RKPVEGQTGH TATNSKVVSM SSSLLASAKT SGGAANSLAI ALQHRSGAAD PSSDTLVNRI  300
QDQRGFSLLS STTNLKSDDS TTFTITKQGV PFVESTLSDF GHVASDSLVN PSHKSYYMNS  360
KEYGHGLFLD FTGQETQDQT PPHQFIDNWP KDQSSRSIVT WPNELKPDWT QLSMSIPMVT  420
SEFSSTLSSP VKEKLDLSSL RLVQEFDQIQ MGLGVNNDIT EQTKKQPNWI PISWGGSMGG  480
PLGEILNNTT NNAGNCQNSS TLTFLSEGLD GNRIQLQNTP FSSLSNSSSG SSPIAENNKK  540
LLDAASVPSI VRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-43LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-43LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624090.10.0PREDICTED: growth-regulating factor 1-like
SwissprotO810011e-118GRF1_ARATH; Growth-regulating factor 1
TrEMBLA0A1U8MWC90.0A0A1U8MWC9_GOSHI; growth-regulating factor 1-like
STRINGGorai.003G032300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-115growth-regulating factor 1
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]