PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_09791_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRF | ||||||||
Protein Properties | Length: 553aa MW: 60527.4 Da PI: 8.2232 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.8 | 2.3e-24 | 202 | 246 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Cotton_A_09791_BGI-A2_v1.0 202 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 246 79****************************************985 PP | |||||||
2 | QLQ | 49.5 | 1.3e-17 | 134 | 168 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +T++Q+ +L +Q+l+yKy+++n+PvP++Ll +++k Cotton_A_09791_BGI-A2_v1.0 134 LTPSQWIELQHQALIYKYIMSNVPVPSNLLTPLKK 168 8******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.5E-8 | 132 | 168 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.511 | 133 | 168 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.1E-12 | 134 | 166 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.287 | 202 | 246 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.9E-21 | 203 | 245 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
MDFGVLGLDG IVGPNNGAPS PSPPVESKPK LFGSGFTKQE RSSDSAEEED HWKSCKVPKT 60 MPLHQGIPLL RSNETPQQQQ DHMISFSSLK SALPFIRKDG NFMEKTTQSN DFSMYTRNAG 120 YGSGNLNATM HGVLTPSQWI ELQHQALIYK YIMSNVPVPS NLLTPLKKSL YPYGFTSSSV 180 GSLPYNSLGW GSFHLRYTGS TDPEPGRCRR TDGKKWRCSR DAVADQKYCE RHINRGRHRS 240 RKPVEGQTGH TATNSKVVSM SSSLLASAKT SGGAANSLAI ALQHRSGAAD PSSDTLVNRI 300 QDQRGFSLLS STTNLKSDDS TTFTITKQGV PFVESTLSDF GHVASDSLVN PSHKSYYMNS 360 KEYGHGLFLD FTGQETQDQT PPHQFIDNWP KDQSSRSIVT WPNELKPDWT QLSMSIPMVT 420 SEFSSTLSSP VKEKLDLSSL RLVQEFDQIQ MGLGVNNDIT EQTKKQPNWI PISWGGSMGG 480 PLGEILNNTT NNAGNCQNSS TLTFLSEGLD GNRIQLQNTP FSSLSNSSSG SSPIAENNKK 540 LLDAASVPSI VRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-43 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-43 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017624090.1 | 0.0 | PREDICTED: growth-regulating factor 1-like | ||||
Swissprot | O81001 | 1e-118 | GRF1_ARATH; Growth-regulating factor 1 | ||||
TrEMBL | A0A1U8MWC9 | 0.0 | A0A1U8MWC9_GOSHI; growth-regulating factor 1-like | ||||
STRING | Gorai.003G032300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1454 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 1e-115 | growth-regulating factor 1 |
Publications ? help Back to Top | |||
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