PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09789_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 187aa    MW: 21692.4 Da    PI: 8.7603
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09789_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.79.2e-1279136562
                                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                                 ++ rr+++NRe+ArrsR RK++ +e+L++ v  L  eN++L ++l+ l  ++  +k++
  Cotton_A_09789_BGI-A2_v1.0  79 RKRRRMISNRESARRSRMRKQKHLENLRNQVNRLRIENRELNNRLKFLLCHCHCVKTD 136
                                 5789**************************************9999887777766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.6E-1375139IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.01377126IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.35E-1179127No hitNo description
PfamPF001704.8E-979135IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-979152No hitNo description
CDDcd147022.53E-2180131No hitNo description
PROSITE patternPS0003608297IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MLFTIPAGFS SDSMVDFDQF PGFETGFTPW DCSEPFPPTT QSIEPAGSGS GSDETNQNQT  60
NSNSSLDQPN QLLSVIDERK RRRMISNRES ARRSRMRKQK HLENLRNQVN RLRIENRELN  120
NRLKFLLCHC HCVKTDNDRL RSEYSILRQK LSDIRQILLF KQLQQYSSAW PCYNVATMSD  180
QIPSLTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17882RKRRR
27899RKRRRMISNRESARRSRMRKQK
39198RRSRMRKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5847423e-94JX584742.1 Gossypium hirsutum clone NBRI_GE18127 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625694.11e-138PREDICTED: bZIP transcription factor 11-like
TrEMBLA0A1U8MSR21e-132A0A1U8MSR2_GOSHI; basic leucine zipper 25-like
STRINGGorai.003G032100.11e-131(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.11e-28basic leucine-zipper 5