PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09739_BGI-A2_v1.0
Common NameF383_14710
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 406aa    MW: 43019.1 Da    PI: 6.4545
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09739_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.94e-22306368163
                                 XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                 e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN  L++e+++lk e+++l +e+
  Cotton_A_09739_BGI-A2_v1.0 306 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENANLRSEVSRLKSEYEQLHAEN 368
                                 89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.7E-29197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.7E-50136273No hitNo description
Gene3DG3DSA:1.20.5.1705.1E-18299365No hitNo description
SMARTSM003383.9E-21306370IPR004827Basic-leucine zipper domain
PfamPF001703.0E-20306368IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.714308371IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-11309365No hitNo description
CDDcd147021.15E-24311361No hitNo description
PROSITE patternPS000360313328IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGSSEMDKAA KEKEPKTPPA ITTQEPSSTT NSGSVNADWS GFQAYSPIPP HGFLASSPQA  60
PPYMWGVQHI MPPYGTPPHP YVAMYPHGGI YAHPSLPPGS YPFSPFAMPS PNGIAEASGN  120
TPGSMEMDGK PPEVKEKLPI KRSKGSLGSL NMITGKNNNL GKTSGASANG GYSKSADSGS  180
EGTSEGSDAN SQNDSQLQSG DGKDSGEGEA SQNGRSAHGP QNGGPNSAHS VANTALAIVP  240
ISTTGAATAV PGPTTNLHIG MDYWGTPASS NVPAMHAKVP STPVAGGIVT PGSRDNVQSQ  300
LWLQDERELK RQRRKQSNRE SARRSRLRKQ AECDELAQRA EALKEENANL RSEVSRLKSE  360
YEQLHAENAS LKERLGEIPG HEDLKSGRND QHRNEDEETE SVQGSH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322328RRSRLRK
2322329RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017626562.10.0PREDICTED: bZIP transcription factor 16
RefseqXP_017626563.10.0PREDICTED: bZIP transcription factor 16
SwissprotQ501B21e-170BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A2P5YRG00.0A0A2P5YRG0_GOSBA; Uncharacterized protein
STRINGGorai.004G181900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-153basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]