PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09723_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 328aa    MW: 36811.2 Da    PI: 5.5658
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09723_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.2e-191663148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEde+l+ +++ +G g+Wkt +++ g++R++k+c++rw +yl
  Cotton_A_09723_BGI-A2_v1.0 16 KGPWTPEEDEKLLGYINTHGHGNWKTLPKHAGLNRCGKSCRLRWANYL 63
                                79********************************************97 PP
2Myb_DNA-binding50.74.1e-1669123147
                                 TSSS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.........tWktIartmgkgRtlkqcksrwqky 47 
                                 rgr+++eE+ l+++++  lG++          W++Ia +++ gRt++++k++w+++
  Cotton_A_09723_BGI-A2_v1.0  69 RGRFSEEEERLIINLHSTLGNKfngfdlilyGWSKIATYLP-GRTDNEIKNFWNTH 123
                                 89***************************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-25966IPR009057Homeodomain-like
PROSITE profilePS5129424.5721167IPR017930Myb domain
SuperFamilySSF466891.13E-2813120IPR009057Homeodomain-like
SMARTSM007174.8E-151565IPR001005SANT/Myb domain
PfamPF002492.3E-171663IPR001005SANT/Myb domain
CDDcd001677.51E-121863No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2367128IPR009057Homeodomain-like
PROSITE profilePS5129415.53668128IPR017930Myb domain
SMARTSM007172.5E-1168126IPR001005SANT/Myb domain
PfamPF002492.1E-1469123IPR001005SANT/Myb domain
CDDcd001675.11E-1171124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGRSPCCSSD DANLKKGPWT PEEDEKLLGY INTHGHGNWK TLPKHAGLNR CGKSCRLRWA  60
NYLRPDIKRG RFSEEEERLI INLHSTLGNK FNGFDLILYG WSKIATYLPG RTDNEIKNFW  120
NTHIRKKLLN MGLDPNNHKP RTDLNHLLNL TQLICAAQLG SLMNPWDSSA LKVQADAAQL  180
LQNLIQTLNT NQLSTTTAGL MGSQNSYPYE GLIHGTSSLY ADEPAPVPQK FHSISQGVID  240
NSWASFEGYE IPDMSDFLIS ELVSESPETL SMNQMGDDKT NTNHSSTMSP ADTSMFQAWE  300
KLMGDETDSS FWEDILDLTS SPSSPIKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27131284108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624811.10.0PREDICTED: transcription factor MYB39-like
TrEMBLA0A0D2PEA10.0A0A0D2PEA1_GOSRA; Uncharacterized protein
STRINGGorai.004G183500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.11e-77myb domain protein 39