PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09722_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 317aa    MW: 35626.8 Da    PI: 5.3694
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09722_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.41e-201663148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEde+l+++++ +G g+Wkt +++ g++R++k+c++rw +yl
  Cotton_A_09722_BGI-A2_v1.0 16 KGPWTPEEDEKLLEYINTHGHGNWKTLPKHAGLNRCGKSCRLRWANYL 63
                                79********************************************97 PP
2Myb_DNA-binding56.27.8e-1869113147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 rgr+++eE+ l+++++  lG++ W++Ia +++ gRt++++k++w+++
  Cotton_A_09722_BGI-A2_v1.0  69 RGRFSEEEERLIINLHSTLGNK-WSKIATYLP-GRTDNEIKNFWNTH 113
                                 89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.2281163IPR017930Myb domain
SMARTSM007174.6E-171565IPR001005SANT/Myb domain
SuperFamilySSF466892.41E-3215110IPR009057Homeodomain-like
PfamPF002498.9E-191663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-261770IPR009057Homeodomain-like
CDDcd001672.86E-131863No hitNo description
PROSITE profilePS5129427.5164118IPR017930Myb domain
SMARTSM007174.7E-1768116IPR001005SANT/Myb domain
PfamPF002492.2E-1669113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2671118IPR009057Homeodomain-like
CDDcd001671.28E-1271114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGRSPCCSSD DAILKKGPWT PEEDEKLLEY INTHGHGNWK TLPKHAGLNR CGKSCRLRWA  60
NYLRPDIKRG RFSEEEERLI INLHSTLGNK WSKIATYLPG RTDNEIKNFW NTHIRKKLLN  120
MGLDPNTHKP RTDLNHLLNL TQLICAAQLG SLMNPWESSA LKVQADAAQL LQNLIQTLNT  180
NQLSTITAGL VGSQTSYPYE GLINGTSSLY ADEPAPVPQK FHLMSQTSSD QHQSQGVIDN  240
SWASFEGYES SDISDFLISE LVPESPETAT TSMNQMGDDK TNTNHGSTMS PDSSIFQAWE  300
KLMDDETDNS FWKDILE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31141185108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624811.10.0PREDICTED: transcription factor MYB39-like
TrEMBLA0A2P5WKX80.0A0A2P5WKX8_GOSBA; Uncharacterized protein
STRINGGorai.004G183600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.23e-84myb domain protein 9