PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09649_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 299aa    MW: 34682.3 Da    PI: 5.2639
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09649_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.18.1e-1166117251
                         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkv 51 
                                 p+Gf+F Pt+eel++eyL +k+ +++l++ ++  ++e+ +y+++P++L +++
  Cotton_A_09649_BGI-A2_v1.0  66 PVGFQFLPTNEELITEYLINKILHNPLPFGDFseVEEAVLYSTHPKSLATMA 117
                                 89************************7775543499999*********8422 PP
2NAM232.2e-07151181232
                         NAM   2 ppGfrFhPtdeelvveyLkkkvegkklelee 32 
                                 p+GfrF Pt eelv++yL kkv g+ l++++
  Cotton_A_09649_BGI-A2_v1.0 151 PVGFRFLPTPEELVKQYLIKKVLGNLLPVSD 181
                                 79*********************99977754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-1063120IPR003441NAC domain
SuperFamilySSF1019416.41E-7148187IPR003441NAC domain
PfamPF023654.0E-6151215IPR003441NAC domain
ProDomPD0038547.0E-44159276IPR001266Ribosomal protein S19e
SMARTSM014131.8E-61168298IPR001266Ribosomal protein S19e
SuperFamilySSF467851.63E-44184297IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF010901.4E-45184296IPR001266Ribosomal protein S19e
PROSITE patternPS006280246265IPR018277Ribosomal protein S19e, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MVLIQNYEDL HWPFLHQISK NRVKEDEVEN PVKEDLHKWD YPIPVSENRV EEDREEDHYE  60
LDNPIPVGFQ FLPTNEELIT EYLINKILHN PLPFGDFSEV EEAVLYSTHP KSLATMAMVE  120
VEKNYEDVHQ NWGHRIPVEE DYYNDWHNQP PVGFRFLPTP EELVKQYLIK KVLGNLLPVS  180
DFLEIELPPW TDIVKGGKLK ELPPYDPDWY YIRAASMARK IYLRGGLGVG AFRRIYGGAK  240
RNGSRPRHFC KSSGSIARHI LQQLQNVNIV DLDTEGGRKI TSNGQRDLDQ VAGRIAVTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_SS2e-561842993014540S ribosomal protein S19
4v7e_BT2e-561842993014540S ribosomal protein S19E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.16e-06NAC domain containing protein 57