PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_09599_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 246aa MW: 28370.7 Da PI: 6.0575 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 150.2 | 1e-46 | 4 | 134 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratks 80 p+GfrF Pt+eelv++yL+++++g++ e+++vi+ ++iy+vePwdLp+ +++ ++++w++F++r++++a+g r+nr+t+s Cotton_A_09599_BGI-A2_v1.0 4 PAGFRFFPTEEELVSFYLRNQLDGRRQEMHSVIPVLNIYDVEPWDLPQlageRCRRDTEQWFYFTPRQEREARGGRANRTTAS 86 89***************************999***************656666666788************************ PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWkatg+ v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+ Cotton_A_09599_BGI-A2_v1.0 87 GYWKATGSPSYVYSSDDRVIGMKKTMVFYKGKAPSGKKTKWKMNEYRA 134 **********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.85E-49 | 2 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.692 | 3 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-23 | 4 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEIPAGFRFF PTEEELVSFY LRNQLDGRRQ EMHSVIPVLN IYDVEPWDLP QLAGERCRRD 60 TEQWFYFTPR QEREARGGRA NRTTASGYWK ATGSPSYVYS SDDRVIGMKK TMVFYKGKAP 120 SGKKTKWKMN EYRAIEAVPN PTAVTTTPML RHEFSLCRIY VVSGSFRAFD RRPLETVSRA 180 TQLHENRTAT FSERASMMEV TSSSSTSHSG GDHSDQPEAN EDDIWEMVND LEEPPLGWEQ 240 MNWTGV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-33 | 1 | 160 | 13 | 166 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC110648 | 0.0 | KC110648.1 Gossypium hirsutum NAC protein 13 (NAC13) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017628399.1 | 0.0 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 6e-91 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A1U8P0V9 | 0.0 | A0A1U8P0V9_GOSHI; NAC domain-containing protein 90-like | ||||
STRING | Gorai.001G122800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 3e-88 | NAC domain containing protein 61 |
Publications ? help Back to Top | |||
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