PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09599_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 246aa    MW: 28370.7 Da    PI: 6.0575
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09599_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.21e-4641342128
                         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratks 80 
                                 p+GfrF Pt+eelv++yL+++++g++ e+++vi+ ++iy+vePwdLp+    +++ ++++w++F++r++++a+g r+nr+t+s
  Cotton_A_09599_BGI-A2_v1.0   4 PAGFRFFPTEEELVSFYLRNQLDGRRQEMHSVIPVLNIYDVEPWDLPQlageRCRRDTEQWFYFTPRQEREARGGRANRTTAS 86 
                                 89***************************999***************656666666788************************ PP

                         NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 gyWkatg+   v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+
  Cotton_A_09599_BGI-A2_v1.0  87 GYWKATGSPSYVYSSDDRVIGMKKTMVFYKGKAPSGKKTKWKMNEYRA 134
                                 **********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-492161IPR003441NAC domain
PROSITE profilePS5100548.6923162IPR003441NAC domain
PfamPF023652.3E-234133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEIPAGFRFF PTEEELVSFY LRNQLDGRRQ EMHSVIPVLN IYDVEPWDLP QLAGERCRRD  60
TEQWFYFTPR QEREARGGRA NRTTASGYWK ATGSPSYVYS SDDRVIGMKK TMVFYKGKAP  120
SGKKTKWKMN EYRAIEAVPN PTAVTTTPML RHEFSLCRIY VVSGSFRAFD RRPLETVSRA  180
TQLHENRTAT FSERASMMEV TSSSSTSHSG GDHSDQPEAN EDDIWEMVND LEEPPLGWEQ  240
MNWTGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-33116013166Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1106480.0KC110648.1 Gossypium hirsutum NAC protein 13 (NAC13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628399.10.0PREDICTED: NAC domain-containing protein 90-like
SwissprotQ9FMR36e-91NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A1U8P0V90.0A0A1U8P0V9_GOSHI; NAC domain-containing protein 90-like
STRINGGorai.001G122800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.23e-88NAC domain containing protein 61
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]