PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_09589_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 412aa MW: 45490.5 Da PI: 7.6624

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_09589_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.9	9.2e-08	162	183	4	25
XCHHHCHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKk 25 k rr+++NReAA++sR+RKk Cotton_A_09589_BGI-A2_v1.0 162 AKTLRRLAQNREAAKKSRLRKK 183 6889*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.6E-5	154	183	No hit	No description
PROSITE pattern	PS00036	0	166	181	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.9E-30	218	293	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MANHHIPYAL LHGMNVPTSF INQEGSAFDF GELEEAIALQ GAKANLLTGR TAATLEMFPS 60 WPMRYQQTPG SSKSGGESTD SGSALNTISS KTENQFEPDS SISKKASSSY HQALDQQNLQ 120 QQQQEMASDP SITGTSLNQS APIVKPLQEK KRASTSEKQL DAKTLRRLAQ NREAAKKSRL 180 RKKGLLLGSS GGGVGNISSG AAMCDMEYAR WLEDDERHMS ELRTGLHSNL SDTDLRLMVN 240 TYLSHYDEIF RLKGMAAKFD VFHLLTGMWT SPAERCFLWM GGFRPSELIK ILISQLDPLT 300 EQQLMGICSL QHSSQQAEEA LSQGLEQLQQ SLIDTVAGGP AIDGMQQMAI ALSKLANLEG 360 FVRQADNLRQ QTLHQLPRIL TVRQAARCFL VIGEYYARLR ALSSLWASRP RG

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MANHHIPYAL LHGMNVPTSF INQEGSAFDF GELEEAIALQ GAKANLLTGR TAATLEMFPS  60
WPMRYQQTPG SSKSGGESTD SGSALNTISS KTENQFEPDS SISKKASSSY HQALDQQNLQ  120
QQQQEMASDP SITGTSLNQS APIVKPLQEK KRASTSEKQL DAKTLRRLAQ NREAAKKSRL  180
RKKGLLLGSS GGGVGNISSG AAMCDMEYAR WLEDDERHMS ELRTGLHSNL SDTDLRLMVN  240
TYLSHYDEIF RLKGMAAKFD VFHLLTGMWT SPAERCFLWM GGFRPSELIK ILISQLDPLT  300
EQQLMGICSL QHSSQQAEEA LSQGLEQLQQ SLIDTVAGGP AIDGMQQMAI ALSKLANLEG  360
FVRQADNLRQ QTLHQLPRIL TVRQAARCFL VIGEYYARLR ALSSLWASRP RG

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016743996.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
Swissprot	Q93XM6	1e-177	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1U8NYG3	0.0	A0A1U8NYG3_GOSHI; transcription factor HBP-1b(C38)-like isoform X1
STRING	Gorai.001G122100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5524	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-141	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]