PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_09531_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GeBP | ||||||||
Protein Properties | Length: 204aa MW: 23396.1 Da PI: 11.0309 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 53.7 | 5.9e-17 | 14 | 103 | 4 | 98 |
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdq 86 +r++se+Dei +L+ li +++ + + ++ + ++++ +++ sq+++KirrL++K +++ ++ ++++hd+ Cotton_A_09531_BGI-A2_v1.0 14 SRVFSESDEIQILKCLIRATKSIPPPITTVGTSTINRIIRRLDHRFTVSQITDKIRRLRDKHHNHARN-----RALVRNHHDR 91 69***************997777755555667889999999***********************9999.....778999**** PP DUF573 87 kifelskkiWgs 98 if+lsk+iWg+ Cotton_A_09531_BGI-A2_v1.0 92 RIFKLSKRIWGK 103 **********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 8.8E-17 | 14 | 102 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MSTTPPSTAP NGRSRVFSES DEIQILKCLI RATKSIPPPI TTVGTSTINR IIRRLDHRFT 60 VSQITDKIRR LRDKHHNHAR NRALVRNHHD RRIFKLSKRI WGKKATPRKK NNKSEDQGAI 120 EVGGDGVEKL DKFPYLVAEF SKVLPENEVW KQKMKRVGEE KLRKMDQEWV MLKVEEAKLV 180 AKKAELIQQQ IMEVMGGNGS ANGV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017630862.1 | 1e-150 | PREDICTED: uncharacterized protein LOC108473653 | ||||
TrEMBL | A0A2P5WU03 | 1e-148 | A0A2P5WU03_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G117300.1 | 1e-146 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17149 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 1e-10 | DNA-binding storekeeper protein-related transcriptional regulator |