PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_09515_BGI-A2_v1.0 | ||||||||
Common Name | F383_31805 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 348aa MW: 38726.5 Da PI: 4.4666 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.4 | 7.2e-50 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtd elv++yLk+kv g+kl l +vi++vd+yk+ PwdLp +++k+++ +wyf+++ +kkya+g+r nrat g Cotton_A_09515_BGI-A2_v1.0 6 LPPGFRFHPTDVELVMYYLKRKVLGQKLLL-NVIAKVDVYKFAPWDLPdmSCMKTGDLKWYFYCPIEKKYARGDRVNRATIFG 87 79*************************988.99**************96448899999************************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 yWkatgkd++v+ ++e+vg+ ktLvf+kg+ap+g +tdWvmheyrle Cotton_A_09515_BGI-A2_v1.0 88 YWKATGKDRPVKY-NDEVVGMIKTLVFHKGKAPRGDRTDWVMHEYRLE 134 *************.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-57 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.365 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-25 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MGKNALPPGF RFHPTDVELV MYYLKRKVLG QKLLLNVIAK VDVYKFAPWD LPDMSCMKTG 60 DLKWYFYCPI EKKYARGDRV NRATIFGYWK ATGKDRPVKY NDEVVGMIKT LVFHKGKAPR 120 GDRTDWVMHE YRLEEKILAD RGPVQDMYML YVVFKKDGLG PRNGSQYGAP FKEEEWSDDE 180 QADLPGAGSL CGLSTVAVGG DNSSCVPESV CVGPSVESSG WCTQPSMMGH TNGDVNVTTA 240 IDTNAYAAPT CPDAPEVQVV AVAEDVPTLL EAPQPALVPQ DQESNDNMLS MLEYFFEEDA 300 FGTHEGQRRG NATDSSFKDT PVSDEDDISN LLASFTDVDN SNNWSYPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-46 | 6 | 133 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC110647 | 0.0 | KC110647.1 Gossypium hirsutum NAC protein 12 (NAC12) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017630805.1 | 0.0 | PREDICTED: NAC domain-containing protein 82-like | ||||
Swissprot | Q9FY82 | 3e-91 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A2P5XJX6 | 0.0 | A0A2P5XJX6_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G065300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3692 | 25 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 1e-93 | NAC domain containing protein 82 |
Publications ? help Back to Top | |||
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