PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_09411_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 21897.3 Da PI: 4.4195 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.5 | 3.4e-18 | 16 | 66 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGVr +k +g+Wv+eIr p++ r r++lg++++ae+Aa+a +aa +l+g Cotton_A_09411_BGI-A2_v1.0 16 SRFKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSAEKAARAFDAALFCLRG 66 789****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.93E-30 | 16 | 76 | No hit | No description |
Pfam | PF00847 | 4.9E-11 | 16 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-20 | 16 | 75 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-31 | 17 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.707 | 17 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-28 | 17 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-9 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-9 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MVKHISEKPA VERSDSRFKG VRKRKWGKWV SEIRLPNSRE RIWLGSYDSA EKAARAFDAA 60 LFCLRGLSAK FNFPDNPPEI AGARSLTPPQ IQAAAAQFAN SEPPRIQSEQ SNSGFQTESP 120 SPSVSDGTVQ LDSELPMDGS FLDLLTIGSG NYESDYGLIF PGFEDFSSDF LGSSLPSIGY 180 EEDYLDGILV PESFLWNF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-15 | 16 | 74 | 13 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 18 | 24 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX616526 | 1e-106 | JX616526.1 Gossypium hirsutum clone NBRI_GE61260 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017645146.1 | 1e-142 | PREDICTED: ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q84QC2 | 5e-59 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A1U8PS67 | 1e-140 | A0A1U8PS67_GOSHI; ethylene-responsive transcription factor ERF017-like | ||||
TrEMBL | A0A2P5YJ98 | 1e-140 | A0A2P5YJ98_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.010G091100.1 | 1e-128 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1614 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19210.1 | 3e-55 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|