PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_09393_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 484aa MW: 54499 Da PI: 7.0541

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_09393_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.5	5.6e-36	47	189	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 lp+G++F+Ptd+el+ e+L++kve+k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+ Cotton_A_09393_BGI-A2_v1.0 47 LPAGVKFDPTDQELI-EHLEAKVEAKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKR 127 799**********.99*****5553344444434666646******.555666799*************** PP NAM 76 ratk........sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 r+++ + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Cotton_A_09393_BGI-A2_v1.0 128 RKIQtecdlqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 189 73334555544778*********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-38	43	208	IPR003441	NAC domain
PROSITE profile	PS51005	33.01	47	208	IPR003441	NAC domain
Pfam	PF02365	2.6E-16	48	189	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MNKSNLMSSI TSSHLIDAKL EEHQLCGSNH CPGCGTKLEG KPDWLGLPAG VKFDPTDQEL 60 IEHLEAKVEA KDMKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY 120 TTGTRKRRKI QTECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRKPEKT 180 NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNWSDRT NAATTVDGTT NAVVVDPNNI 240 RRDSGIRSCS SKEQLIPLRD EVSGAGIAAA ALSSFAAAMD IQHLKSDHHL SFTPFSKSFD 300 QVGLAEASAA RETPTQGTGQ EIPEHHRGPN HMAHDHHHHH LLHHHQHQQQ QQHQIATTAF 360 HITRPSHPIS TIISPPPLHH TSIILDEDSF HVSRIMLQNE SFQQQQEQQN HKLGGRSATG 420 LEELIMGCTS TDIKEVSENI AFKTLKLTLF IIFGQESSIT NPQEAEWLKY SSFWPDPDNH 480 DHHG

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MNKSNLMSSI TSSHLIDAKL EEHQLCGSNH CPGCGTKLEG KPDWLGLPAG VKFDPTDQEL  60
IEHLEAKVEA KDMKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY  120
TTGTRKRRKI QTECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRKPEKT  180
NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNWSDRT NAATTVDGTT NAVVVDPNNI  240
RRDSGIRSCS SKEQLIPLRD EVSGAGIAAA ALSSFAAAMD IQHLKSDHHL SFTPFSKSFD  300
QVGLAEASAA RETPTQGTGQ EIPEHHRGPN HMAHDHHHHH LLHHHQHQQQ QQHQIATTAF  360
HITRPSHPIS TIISPPPLHH TSIILDEDSF HVSRIMLQNE SFQQQQEQQN HKLGGRSATG  420
LEELIMGCTS TDIKEVSENI AFKTLKLTLF IIFGQESSIT NPQEAEWLKY SSFWPDPDNH  480
DHHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-12	45	189	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847200	0.0	KC847200.1 Gossypium hirsutum NAC domain protein NAC23 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445629.1	0.0	PREDICTED: NAC domain-containing protein 62-like
Refseq	XP_012445631.1	0.0	PREDICTED: NAC domain-containing protein 62-like
Refseq	XP_012445632.1	0.0	PREDICTED: NAC domain-containing protein 62-like
Refseq	XP_012445633.1	0.0	PREDICTED: NAC domain-containing protein 62-like
Refseq	XP_012445634.1	0.0	PREDICTED: NAC domain-containing protein 62-like
Refseq	XP_012445635.1	0.0	PREDICTED: NAC domain-containing protein 62-like
Refseq	XP_012445636.1	0.0	PREDICTED: NAC domain-containing protein 62-like
Refseq	XP_012445637.1	0.0	PREDICTED: NAC domain-containing protein 62-like
Refseq	XP_012445638.1	0.0	PREDICTED: NAC domain-containing protein 62-like
Swissprot	Q9M0F8	0.0	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A0D2UFB9	0.0	A0A0D2UFB9_GOSRA; Uncharacterized protein
STRING	Gorai.009G028900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6635	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-168	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]