PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_09326_BGI-A2_v1.0 | ||||||||
Common Name | F383_07760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRF | ||||||||
Protein Properties | Length: 375aa MW: 42727.2 Da PI: 8.3634 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.4 | 6.8e-25 | 77 | 121 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e Cotton_A_09326_BGI-A2_v1.0 77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEV 121 79****************************************985 PP | |||||||
2 | QLQ | 54 | 5.1e-19 | 9 | 43 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q q+L++Q+l++Ky++++ P+Pp+Ll+ i+ Cotton_A_09326_BGI-A2_v1.0 9 PFTASQYQELEHQALIFKYMVSGIPIPPDLLFTIK 43 8******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.5E-10 | 8 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.104 | 9 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.0E-14 | 9 | 42 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.98 | 77 | 121 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-20 | 78 | 120 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MMSGRNRFPF TASQYQELEH QALIFKYMVS GIPIPPDLLF TIKRSCLDTS LSSRLFSYQP 60 QHIGWNCFQM GLGRKVDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GKNRSRKPVE 120 VSNATMANPS TATQNISSIT KTHHPPSFSS LSSMSLSSES QQQHQLRYHG YHSQANHPFM 180 YPHASRPPGV GLSPQENTTH SLLGSGSYSQ TNTDYRRNSY VYGLKEEVDE HAFFSEPSGT 240 MRSFSGSSVD DSWQLAPLTM SSSSSKQRNC SGLQSEYSYL QLQSLTDHNP KQNKQDADEH 300 SYIKYEMTDE LEKGEPQKTV HRFFDEWPPK HRDSWLDLDD KSSNSSSVST TRLSISIPST 360 SHDFPIFNSR AHNDG |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM468035 | 4e-46 | AM468035.1 Vitis vinifera contig VV78X155042.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017643733.1 | 0.0 | PREDICTED: growth-regulating factor 1-like isoform X1 | ||||
TrEMBL | A0A0B0P2H2 | 0.0 | A0A0B0P2H2_GOSAR; Uncharacterized protein | ||||
STRING | Gorai.009G035200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4567 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-56 | growth-regulating factor 5 |