PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09306_BGI-A2_v1.0
Common NameF383_23731
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 390aa    MW: 43003.3 Da    PI: 5.1695
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09306_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.31.1e-15192247358
                                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                                 ++kr rr+ +NRe+ArrsR+RK+a + eLe  v +L  eN +L k l  +++ + +
  Cotton_A_09306_BGI-A2_v1.0 192 DVKRVRRMLSNRESARRSRRRKQAHLTELESQVSQLRVENADLLKSLTDISQRYNE 247
                                 68******************************************999998887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-17190254IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.312192247IPR004827Basic-leucine zipper domain
PfamPF001701.4E-13193244IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.9E-12194246No hitNo description
SuperFamilySSF579591.13E-11194243No hitNo description
PROSITE patternPS000360197212IPR004827Basic-leucine zipper domain
PfamPF124981.8E-34261384IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDRVFSVEEI PDHFWSSSAP DDDKNKSPGS EMNRSTSEWA FQQFLREEVD KKGEDNEEEE  60
AKENGCFENN KHDNIPADVE DYQAFLKKKL NLACAAVAMS MASFAKPQDS ATRADRGSQA  120
SNTPQLGSKT VSRGTGDKDD NAVAEVLSFP SGQKKFRAQV RPSTSTGSSK EQSDEDEVEG  180
ENETTENMDP ADVKRVRRML SNRESARRSR RRKQAHLTEL ESQVSQLRVE NADLLKSLTD  240
ISQRYNEAAV NNRILKADVE TLKAKVKMAE EAVKRTTGLN PVFHALPEIP SMSSFDGCPS  300
ETSTDAAVYE EDGPKHTLYQ AAANDSISTH DLRINNALAD ISSVENIQPV SEGSAVTGNK  360
IGRTASLHRV ASLEHLQKRI RGGVSLNGKQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206213RRSRRRKQ
2208213SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628206.10.0PREDICTED: light-inducible protein CPRF2
SwissprotQ990901e-120CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A0B0P2690.0A0A0B0P269_GOSAR; Light-inducible CPRF2
STRINGGorai.007G277300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68462743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.28e-66bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]