PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09236_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 342aa    MW: 37997.4 Da    PI: 5.1725
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09236_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind119.61.8e-37571482102
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl k+y++++d+ ++++isw+eng+sfvv+++ +fak++Lp+yFkh+nf+SFvRQLn+YgF+kv  ++         weF+++
  Cotton_A_09236_BGI-A2_v1.0  57 FLIKTYQLVDDPITDDVISWNENGTSFVVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKVVPDK---------WEFANE 130
                                 9****************************************************************999.........****** PP

                                 XXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                                 +Fk+g+kell++i+r+k+
  Cotton_A_09236_BGI-A2_v1.0 131 NFKRGQKELLSEIRRRKT 148
                                 ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-3946140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-6253146IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.17E-3454146IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.1E-3257146IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-205780IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-2095107IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434096120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-20108120IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
METDTIKPCD NVVHSRFFLS GFYCWGWEFL TALLLFSCSA KNDQSENMAQ RSVPAPFLIK  60
TYQLVDDPIT DDVISWNENG TSFVVWKTAD FAKDLLPNYF KHNNFSSFVR QLNTYGFRKV  120
VPDKWEFANE NFKRGQKELL SEIRRRKTVT TSPTNNPANG KTSGAGASSP TNSGEDLGST  180
STSTSPESKN PGSVETTPAV NTNQYADLSD ENEKLKKDNE MLSSELAQAK KQCDELVAFL  240
TECVKVGPDQ IDRIMRQGNG GSTLEGDDLG RFYGVDDNDD DEKGGGEDGN GSLKLFGVWL  300
KSAGKKRARE EKIVYGGPYA KEMKTVDFRH VALMMKSGKV CN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-265214825131Heat shock factor protein 1
5d5v_B5e-265214825131Heat shock factor protein 1
5d5v_D5e-265214825131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7024450.0KJ702445.1 Gossypium hirsutum heat shock transcription factor (HSF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627210.10.0PREDICTED: heat shock factor protein HSF24-like
SwissprotP223351e-114HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A2P5XGW30.0A0A2P5XGW3_GOSBA; Uncharacterized protein
STRINGGorai.003G023500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61012546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.19e-97heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]