PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09220_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 395aa    MW: 42218.1 Da    PI: 7.4496
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09220_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.12.2e-4092201289
                         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 
                                 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG++ d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s
  Cotton_A_09220_BGI-A2_v1.0  92 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKYDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGS 174
                                 789******************************************************************99987777788877 PP

                         TCP  84 nsssg.....................k 89 
                                 + s +                      
  Cotton_A_09220_BGI-A2_v1.0 175 SMSVPsqlrssgfssnfsmqqrrslfP 201
                                 666664444444444444544444440 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-4096251IPR005333Transcription factor, TCP
PROSITE profilePS5136927.26598152IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEGGGSDDHH HHHHSHHHHH QQPLHHHHHH HHRPTFPFQL LEKKEEDNQP CSSSSSLPFP  60
SLPVSSSSAD QHTSTRSIST HQISPETSKT PPPKRTSTKD RHTKVDGRGR RIRMPALCAA  120
RVFQLTRELG HKYDGETIEW LLQQAEPAVI AATGTGTIPA NFTSLNISLR SSGSSMSVPS  180
QLRSSGFSSN FSMQQRRSLF PGIGLETTPT PTTFLNFQSS STSLGISEEA EESSLGRKRR  240
PEQDLSSQHH QMGSYLLQSS TGTIPASHHG QVPANFWMVT NSNNQVMSGG DPIWTFPSVN  300
NSGLYRGTMS SGLHFMNFPT PMALLPGQQL GSSSSGADGG GGGGGSGGSS GISEGHLNML  360
AGLNPYRQDS GGTGVSESQV SGSHSHHGGG GGGDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334345SGADGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3591210.0DQ359121.1 Gossypium barbadense TCP domain-like protein I mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617039.10.0PREDICTED: transcription factor TCP14
SwissprotQ93Z008e-69TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A1U8JZI30.0A0A1U8JZI3_GOSHI; transcription factor TCP14
STRINGGorai.007G036800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39152757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.14e-56TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]