PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09163_BGI-A2_v1.0
Common NameF383_03478
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 276aa    MW: 31592.3 Da    PI: 6.1514
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09163_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1683.1e-5261331128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksg 81 
                                 lppGfrFhPtdeelv +yLk+k eg ++el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nratk+g
  Cotton_A_09163_BGI-A2_v1.0   6 LPPGFRFHPTDEELVGYYLKRKNEGLEIEL-EVIPVLDLYKFDPWELPeKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAG 87 
                                 79****************************.99**************95344555788************************* PP

                         NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 yWkatgkd++v++ + +++g +ktLvfy+grap g +tdW mheyrl
  Cotton_A_09163_BGI-A2_v1.0  88 YWKATGKDRKVVC-QPAVTGYRKTLVFYRGRAPLGDRTDWAMHEYRL 133
                                 *************.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-584152IPR003441NAC domain
PROSITE profilePS5100557.2986152IPR003441NAC domain
PfamPF023651.1E-287133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEGALLPPGF RFHPTDEELV GYYLKRKNEG LEIELEVIPV LDLYKFDPWE LPEKSFLPKR  60
DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QPAVTGYRKT LVFYRGRAPL  120
GDRTDWAMHE YRLSDEPSLG SSAFALCRVV KRNDGKPKEM SIGSSSTNVE LTSITRNCNE  180
PLSTISCQTS YPNNETRYSV DTDPASFWAS PDVVFDSSKD YPQTRETAAQ YFPQYGFPSL  240
NQSPYSNFGE SEHFDDLGRI GCMSPYSGHA NDILWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-50615817171NO APICAL MERISTEM PROTEIN
1ut4_B4e-50615817171NO APICAL MERISTEM PROTEIN
1ut7_A4e-50615817171NO APICAL MERISTEM PROTEIN
1ut7_B4e-50615817171NO APICAL MERISTEM PROTEIN
4dul_A4e-50615817171NAC domain-containing protein 19
4dul_B4e-50615817171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472150.0KC847215.1 Gossypium hirsutum NAC domain protein NAC38 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017620199.10.0PREDICTED: NAC domain-containing protein 45-like
RefseqXP_017620200.10.0PREDICTED: NAC domain-containing protein 45-like
SwissprotO496971e-100NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A0B0PKR90.0A0A0B0PKR9_GOSAR; NAC domain-containing 78-like protein
STRINGGorai.007G031300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21512777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-102NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]