PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09138_BGI-A2_v1.0
Common NameF383_18949
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 290aa    MW: 32649.7 Da    PI: 8.038
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09138_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-19126180256
                                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 rk+ +++k+q  +Lee+F+k+++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Cotton_A_09138_BGI-A2_v1.0 126 RKKLRLSKDQSAILEECFKKHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 180
                                 788899***********************************************98 PP
2HD-ZIP_I/II128.82.3e-41126215191
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 +kk+rlsk+q+++LEe+F+++++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke
  Cotton_A_09138_BGI-A2_v1.0 126 RKKLRLSKDQSAILEECFKKHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 208
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreel 91 
                                 v+eLr +l
  Cotton_A_09138_BGI-A2_v1.0 209 VQELR-AL 215
                                 ****9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046185.3E-27298IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.3E-18113176IPR009057Homeodomain-like
SuperFamilySSF466892.97E-19113183IPR009057Homeodomain-like
PROSITE profilePS5007117.103122182IPR001356Homeobox domain
SMARTSM003899.3E-17124186IPR001356Homeobox domain
PfamPF000468.6E-17126180IPR001356Homeobox domain
CDDcd000861.13E-15126183No hitNo description
PRINTSPR000311.9E-5153162IPR000047Helix-turn-helix motif
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
PRINTSPR000311.9E-5162178IPR000047Helix-turn-helix motif
SMARTSM003404.2E-27182225IPR003106Leucine zipper, homeobox-associated
PfamPF021832.2E-11182216IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MMVGKDQDLG LSLSLSSSQN HHSLQLNLGP SLVPSSANQC YSPSDPNMES LRAETRSFLK  60
GIDVNRLPST VDCEEEAGVS SPNSTISSSL SGKRSEREGN NNGDELEIER ASSHGISDEE  120
DGDTSRKKLR LSKDQSAILE ECFKKHNTLN PKQKLALAKQ LGLRPRQVEV WFQNRRARTK  180
LKQTEVDCEF LKRCCENLTE ENRRLQKEVQ ELRALKLSPQ FYMQMNPPTT LTMCPSCERV  240
GVPQNASSTV EPRSHHHLLQ SHQQRHITIN PWAPSAPIPH RPFDALHPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130SRKKLRL
2174182RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8484810.0GQ848481.1 Gossypium arboreum cultivar FDH-171 homeodomain associated leucine zipper protein (HDZip) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617301.10.0PREDICTED: homeobox-leucine zipper protein HAT4-like
SwissprotP466011e-113HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A0B0NTM70.0A0A0B0NTM7_GOSAR; Homeobox-leucine zipper HAT4-like protein
STRINGGorai.007G029200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.16e-94homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]