PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09135_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 228aa    MW: 25733.5 Da    PI: 5.6224
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09135_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-1861110356
                         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                 y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++ge
  Cotton_A_09135_BGI-A2_v1.0  61 YRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFETAEMAARAHDVAALTIKGE 110
                                 9****998.**********854...6***********************99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.3E-3760123IPR001471AP2/ERF domain
PROSITE profilePS5103223.31460117IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2260119IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-3360119IPR001471AP2/ERF domain
PRINTSPR003674.3E-116172IPR001471AP2/ERF domain
CDDcd000184.16E-3361119No hitNo description
PfamPF008476.7E-1261110IPR001471AP2/ERF domain
PRINTSPR003674.3E-118399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSTTEVPLIA TSETQSSSSP PENESGAEIF KSERTRKSET GNERKGKVKN DEIFEGKHQT  60
YRGVRMRQWG KWVSEIREPK KKSRIWLGTF ETAEMAARAH DVAALTIKGE SAYLNFPDSA  120
HELPRPRSSS PKDIQAAAAK AAAMSFTKSS HKHDEDDADQ LIPHRDSSSS SSPLINDDAF  180
IDLPDLLMHM NHRIDEFWVS FPWPVTATDD DIVENGFGYS ESRLREYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-18581171272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618925.11e-169PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ9ZQP31e-52ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A2P5XEN51e-166A0A2P5XEN5_GOSBA; Uncharacterized protein
STRINGGorai.007G028800.11e-145(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.11e-52ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]