PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_09028_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HSF | ||||||||
Protein Properties | Length: 380aa MW: 42736.6 Da PI: 4.4556 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.4 | 1.5e-35 | 50 | 141 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 Fl+k+++++ed+++++++swse nsf+v+d+++f++++Lp+yFkh+nf+SF+RQLn+YgF+kv+ ++ weF+++ Cotton_A_09028_BGI-A2_v1.0 50 FLTKTFDMVEDPSTDSVVSWSEARNSFIVWDSHKFSTTLLPRYFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFANE 123 9****************************************************************999.........****** PP XXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 85 sFkkgkkellekikrkks 102 F g+k+ll++ikr+++ Cotton_A_09028_BGI-A2_v1.0 124 GFLGGQKQLLKTIKRRRN 141 ***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.6E-38 | 46 | 139 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.4E-60 | 46 | 139 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.35E-34 | 46 | 139 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.1E-31 | 50 | 139 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.8E-20 | 50 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.8E-20 | 88 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 89 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.8E-20 | 101 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0034620 | Biological Process | cellular response to unfolded protein | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071456 | Biological Process | cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MEGVVVKEEE TQMTFATAVG TTAGFSSSSS SSNVTPQPKE GLNEVGPPPF LTKTFDMVED 60 PSTDSVVSWS EARNSFIVWD SHKFSTTLLP RYFKHNNFSS FIRQLNTYGF RKVDPDRWEF 120 ANEGFLGGQK QLLKTIKRRR NIVQSSQHQA GGGGACVELG QFGLDEELER LKRDRSVLLA 180 EIVRLRQHQQ HSKDQIVAME DRLQSTEKKQ QQIMSFLAKA LRNPTFIRQL AQNRQAQGVE 240 IGRKRRLMAS PSVENLQQEA VPVVVDNDQV EEQEGLATIE TEIETFFNSA MDDESSTEIK 300 DHIPSPMPLS SVTNNLGVNE TLWEELVHED LLAGEPKEEI VVGDQAEVDV EVEDLAANPI 360 DWGDDLQELV DQMGYLRSNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-26 | 41 | 139 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-26 | 41 | 139 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-26 | 41 | 139 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 138 | LKTIKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR067420 | 0.0 | KR067420.1 Gossypium hirsutum HSF39 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017619183.1 | 0.0 | PREDICTED: heat shock factor protein HSF30 isoform X1 | ||||
Swissprot | P41152 | 1e-132 | HSF30_SOLPE; Heat shock factor protein HSF30 | ||||
TrEMBL | A0A1U8IC50 | 0.0 | A0A1U8IC50_GOSHI; heat shock factor protein HSF30 isoform X1 | ||||
STRING | Gorai.013G220400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11672 | 27 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 1e-123 | heat shock transcription factor A2 |
Publications ? help Back to Top | |||
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