PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08984_BGI-A2_v1.0
Common NameF383_06566
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 290aa    MW: 31210.5 Da    PI: 7.4712
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08984_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.2e-101154344
                                SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
             Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                 W+ e d+ + +a + ++ +   +W++Ia+ ++ g+ lk++k+++
  Cotton_A_08984_BGI-A2_v1.0 11 EWSREQDKAFENALATYPEDsldRWEKIAADVP-GKNLKEIKEHY 54
                                7********************************.**********9 PP
2Myb_DNA-binding43.95.7e-14122166347
                                 SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 +WT++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  Cotton_A_08984_BGI-A2_v1.0 122 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                                 6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-5555IPR009057Homeodomain-like
PROSITE profilePS512938.11762IPR017884SANT domain
SMARTSM007177.7E-9860IPR001005SANT/Myb domain
SuperFamilySSF466891.51E-101063IPR009057Homeodomain-like
PfamPF002491.7E-71154IPR001005SANT/Myb domain
CDDcd001679.39E-91157No hitNo description
PROSITE profilePS5129417.61114171IPR017930Myb domain
SuperFamilySSF466897.9E-17117172IPR009057Homeodomain-like
SMARTSM007174.5E-11119169IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.4E-17119169IPR006447Myb domain, plants
PfamPF002497.1E-12122166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-11122165IPR009057Homeodomain-like
CDDcd001671.21E-10122167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MTVEEAVNSS EWSREQDKAF ENALATYPED SLDRWEKIAA DVPGKNLKEI KEHYELLEDD  60
VNRIVSGCVP LPPYNSFEGS TGHAGDEGTG KKGSGHLSHC NNDSNHGSKN SRSDQERRKG  120
IAWTEDEHRL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS  180
SIHDITSVGN GDIASQGPIT GQSNGAAAGG SSAKSAKQTS QHPASPPGVD MYGALTIGQP  240
IGGPLVSAVG RPVNLPASAH MGYGVTVPGA PMNMGPATYP MPHSTAHSHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1412761175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632913.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_017632914.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN61e-122SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0B0PST80.0A0A0B0PST8_GOSAR; Transcription factor MYB1R1
STRINGGorai.005G212900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-117MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]