PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_08899_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | DBB | ||||||||
Protein Properties | Length: 196aa MW: 21776.6 Da PI: 5.0356 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.7 | 2.3e-08 | 3 | 44 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++++e++lfC ++ lCe C + H+ H + Cotton_A_08899_BGI-A2_v1.0 3 ICCDVCSKEEATLFCYADEAVLCEACDVGVHHAnklatkHCR 44 58****************************744467766765 PP | |||||||
2 | zf-B_box | 25.3 | 3.2e-08 | 56 | 97 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ ++e + +fC++++ lC +C l++H+ H+ Cotton_A_08899_BGI-A2_v1.0 56 SPLCDICQERRGFIFCKEDRAVLCMKCDLSIHRAneytqkHN 97 579*******9*********************7666666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.576 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.2E-6 | 3 | 46 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.0E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.27E-7 | 5 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.855 | 54 | 101 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.5E-13 | 54 | 101 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.2E-6 | 56 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.14E-8 | 57 | 101 | No hit | No description |
Gene3D | G3DSA:4.10.45.10 | 4.2E-4 | 69 | 89 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MKICCDVCSK EEATLFCYAD EAVLCEACDV GVHHANKLAT KHCRLPLLNP NSCNASPLCD 60 ICQERRGFIF CKEDRAVLCM KCDLSIHRAN EYTQKHNRFL LTGVKLSSLN PISYCSNGVD 120 DESKNLQCSI SNNEILSPAS IEKPLGVEDN YSNSDNTSVS TTNNMSEYFM ETIPGWLLDD 180 FLHPSSPANA FSYGKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017614736.1 | 1e-142 | PREDICTED: B-box zinc finger protein 21-like | ||||
Swissprot | Q9LQZ7 | 7e-58 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A1U8NJW2 | 1e-138 | A0A1U8NJW2_GOSHI; B-box zinc finger protein 21-like | ||||
STRING | Gorai.012G154400.1 | 1e-134 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6597 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 2e-56 | salt tolerance homolog2 |