PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08816_BGI-A2_v1.0
Common NameF383_02527
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 631aa    MW: 70908.2 Da    PI: 5.0564
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08816_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.94e-53211472128
                         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                 ppGfrFhPtdeelv +yLk+k+ +k+l+l ++i+e+d+yk++P++Lp +  +k+++++w+fF++rd+ky++g r+nrat +gy
  Cotton_A_08816_BGI-A2_v1.0  21 PPGFRFHPTDEELVLYYLKRKICKKRLKL-DIIRETDVYKWDPEELPgQsVLKNGDRQWFFFCPRDRKYPNGARSNRATIHGY 102
                                 8****************************.99**************96447788999************************** PP

                         NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 Wkatgkd+++++ ++++vg+kktLvfy+grap+ge+tdWvmhey+l
  Cotton_A_08816_BGI-A2_v1.0 103 WKATGKDRSIIC-NSRAVGIKKTLVFYRGRAPNGERTDWVMHEYTL 147
                                 ************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5917170IPR003441NAC domain
PROSITE profilePS5100555.22820170IPR003441NAC domain
PfamPF023652.0E-2721147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MKVTATAVTV DSGFGDDQVW PPGFRFHPTD EELVLYYLKR KICKKRLKLD IIRETDVYKW  60
DPEELPGQSV LKNGDRQWFF FCPRDRKYPN GARSNRATIH GYWKATGKDR SIICNSRAVG  120
IKKTLVFYRG RAPNGERTDW VMHEYTLDEE ELKRCQNVKD YYALYKLYKK SGPGPKNGEQ  180
YGAPFKEEAW DDEEYSSNPL DTITPVKPPN EAIPVDNVKA NVQSESPLND IEEFMRQFAD  240
EPAPPQPQAY HSHVLHQVVS AEETQSTLLD PSPRGVLFPE QLTVLHGQAR FEFSESPISQ  300
LLLQEAPEVT PVADHLGQVP QLCEEDFLEI DDLLGPEPLI SNIEKPVENK QFNELDGLSE  360
FDLYHDAAMF LQDMGSLDQG TVPFLYDNMI NQVSYQLESR SNISLMNQQY LPHSNLNLID  420
KQWQNQANAN MMEQHLQPQL NASGGNMLNQ VGYQSGPNIN SMDQQSVLHS SVDQVDYHGQ  480
NQHLQMDQIN GALWTHEQSG DAFIPSGSNL GNASPTSGFV NNGPKQDQGN KNDGSGGGSW  540
FSSSLWSFVD SIPTAPASAA ENPLVNRALE RMSSFSKLRI HAMNTAVNGS ASARRRSRNR  600
GFFFISILGA LCAVLWFLIG TVRVLGRSIS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-482114716140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13847KRKICKKRLK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472220.0KC847222.1 Gossypium hirsutum NAC domain protein NAC45 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633751.10.0PREDICTED: NAC domain-containing protein 17-like isoform X1
TrEMBLA0A1U8N6K00.0A0A1U8N6K0_GOSHI; NAC domain-containing protein 17-like isoform X1
STRINGGorai.005G076200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-110NAC domain containing protein 17