PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08671_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 281aa    MW: 31760.7 Da    PI: 7.565
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08671_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.89.8e-28281612128
                         NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkr 73 
                                 ppG+rF P++eel+++yL+ k ++          +++i+e+++y++eP+dLp+       +  + ++ ++F+ +++k   g r
  Cotton_A_08671_BGI-A2_v1.0  28 PPGCRFYPSEEELLNHYLTGKNNSFAadradAYGSDFIRELNLYDYEPSDLPEgacfvhGY--KGRRRHWFCYTKSK---GGR 105
                                 9******************998877743433222458***************556664322..44556667766554...678 PP

                         NAM  74 knratksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                                  +r +k g+W++ gk ++v++ ++ + g+++ +vfy+  + + +++t W+m ey++
  Cotton_A_08671_BGI-A2_v1.0 106 GRRRAKGGFWRKIGKVRDVFDGGNVKLGTRTKFVFYEMnSVKAAVRTPWIMYEYAV 161
                                 8888899**************99999**********762566678*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-3324177IPR003441NAC domain
PROSITE profilePS5100534.75627177IPR003441NAC domain
PfamPF023651.1E-1628160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSNNQNSNLP LIDIGGGSSR TSSPYHFPPG CRFYPSEEEL LNHYLTGKNN SFAADRADAY  60
GSDFIRELNL YDYEPSDLPE GACFVHGYKG RRRHWFCYTK SKGGRGRRRA KGGFWRKIGK  120
VRDVFDGGNV KLGTRTKFVF YEMNSVKAAV RTPWIMYEYA VLHRHKASFV LCRVFIKSRA  180
RNSVSENVLS CAEETVSAIR HVGIQHDGFL RRDTLEAEIN GDDFTKELDV PITTRPVSVA  240
SFEFPSGIPP DLPDNMVGPR LTTSELLSIV DEDFIELDDL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-142617814169Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017602974.10.0PREDICTED: NAC domain-containing protein 90-like
RefseqXP_017602975.10.0PREDICTED: NAC domain-containing protein 90-like
TrEMBLA0A2P5VTK50.0A0A2P5VTK5_GOSBA; Uncharacterized protein
STRINGGorai.009G214000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17192810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.14e-15NAC family protein