PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_08656_BGI-A2_v1.0

Common Name

F383_05752

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 417aa MW: 44591.9 Da PI: 9.8326

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_08656_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.5	9e-16	339	389	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+ e+ ++ Cotton_A_08656_BGI-A2_v1.0 339 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKHAEIMEM 389 79*****************************************99998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.6E-13	335	393	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.588	337	388	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.69E-11	339	388	No hit	No description
Pfam	PF00170	1.2E-13	339	389	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.1E-15	339	388	No hit	No description
CDD	cd14707	4.05E-27	339	390	No hit	No description
PROSITE pattern	PS00036	0	342	357	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0010255	Biological Process	glucose mediated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MGTNMNFGSN PPPSGDGGGN KPPGNNLLTR QPSIYSLTFD EFQSTMGGIG KDFGSMNMDE 60 LLRNIWSAEE IQTMASSGGV LEGNGGLQRQ GSLTLPRTLS QKTVDEVWKD ISKEYSLGKD 120 GIGGGGGTNN MPQRQQTLGE MTLEEFLVRA GVVREDTQLA GKVNNGGFFG GNNTGFEIGF 180 QQGGKGPNLM GTRIPDGGNQ IGIQASNLHP NVNGVRSNQH QLAQQHQHQQ PIFPKQTGVG 240 YGAQIPLQSG GQLGSPGIRS GMHGIGDQGI SNGLIQAGAL QGGGMGMVGL GTGSPANQLS 300 SDGIGKSSGD TSSVSPVPYV FNGSMRGRKY SAVEKVAERR QRRMIKNRES AARSRARKQA 360 YTMELEAEVA KLKEENEELR KKHAEIMEMQ NNQAIEMVDM QQGAKKRCLR RTQTGPW

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MGTNMNFGSN PPPSGDGGGN KPPGNNLLTR QPSIYSLTFD EFQSTMGGIG KDFGSMNMDE  60
LLRNIWSAEE IQTMASSGGV LEGNGGLQRQ GSLTLPRTLS QKTVDEVWKD ISKEYSLGKD  120
GIGGGGGTNN MPQRQQTLGE MTLEEFLVRA GVVREDTQLA GKVNNGGFFG GNNTGFEIGF  180
QQGGKGPNLM GTRIPDGGNQ IGIQASNLHP NVNGVRSNQH QLAQQHQHQQ PIFPKQTGVG  240
YGAQIPLQSG GQLGSPGIRS GMHGIGDQGI SNGLIQAGAL QGGGMGMVGL GTGSPANQLS  300
SDGIGKSSGD TSSVSPVPYV FNGSMRGRKY SAVEKVAERR QRRMIKNRES AARSRARKQA  360
YTMELEAEVA KLKEENEELR KKHAEIMEMQ NNQAIEMVDM QQGAKKRCLR RTQTGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00186	DAP	Transfer from AT1G45249	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017606150.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	1e-138	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A0B0PLL0	0.0	A0A0B0PLL0_GOSAR; Abscisic acid-insensitive 5-like protein 5
STRING	Gorai.009G212600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-108	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]