PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_08600_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 121aa MW: 13489.6 Da PI: 10.0861 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.1 | 3.8e-30 | 14 | 79 | 1 | 66 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAe 66 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vye + Cotton_A_08600_BGI-A2_v1.0 14 PCAACKLLRRRCAHDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEKQ 79 7**************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.824 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.1E-30 | 14 | 79 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MKESGGRKQG AASPCAACKL LRRRCAHDCV FAPYFPADEP HKFANVHKVF GASNVNKMLQ 60 ELPVHQRGDA VSSMVYEKQP AIKLGFELFL IDSKVLRLVK VILQYTQRER ERERGSSGGT 120 G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-33 | 10 | 83 | 7 | 80 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-33 | 10 | 83 | 7 | 80 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ394806 | 3e-96 | GQ394806.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1829 SSR marker DPL0016 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455253.1 | 5e-52 | PREDICTED: LOB domain-containing protein 4-like | ||||
Refseq | XP_017648532.1 | 4e-52 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 6e-46 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A0B0NU77 | 9e-51 | A0A0B0NU77_GOSAR; LOB domain-containing 4-like protein | ||||
TrEMBL | A0A0D2UNR8 | 1e-50 | A0A0D2UNR8_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A2P5Q7G3 | 1e-50 | A0A2P5Q7G3_GOSBA; Uncharacterized protein | ||||
TrEMBL | A0A2P5XK95 | 9e-51 | A0A2P5XK95_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G051200.1 | 2e-51 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-48 | LOB domain-containing protein 4 |