PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08599_BGI-A2_v1.0
Common NameF383_18924
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 171aa    MW: 18525 Da    PI: 8.1497
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08599_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260146.67.1e-46141131100
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++l
  Cotton_A_08599_BGI-A2_v1.0  14 PCAACKLLRRRCAHDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSL 96 
                                 7********************************************************************************** PP

                      DUF260  84 qqqleqlkaelallkee 100
                                 qqq+++l+++lal+++e
  Cotton_A_08599_BGI-A2_v1.0  97 QQQIDTLQTQLALAQAE 113
                                 ************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.58713114IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-4514111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MKESGGRKQG AASPCAACKL LRRRCAHDCV FAPYFPADEP HKFANVHKVF GASNVNKMLQ  60
ELPVHQRGDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DTLQTQLALA QAEVVHLKVR  120
QTASYSHHGF APTSPTNSGS PSSNHGSQVK PIFDMDVVMD QASLGEPMWS C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-50101157112LOB family transfactor Ramosa2.1
5ly0_B4e-50101157112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3948065e-96GQ394806.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1829 SSR marker DPL0016 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648532.11e-127PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE91e-78LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A0B0NU771e-125A0A0B0NU77_GOSAR; LOB domain-containing 4-like protein
TrEMBLA0A2P5XK951e-125A0A2P5XK95_GOSBA; Uncharacterized protein
STRINGGorai.011G051200.11e-126(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.11e-70LOB domain-containing protein 4