PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_08555_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 390aa MW: 43674.4 Da PI: 4.6954

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_08555_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.9	3e-19	120	169	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g Cotton_A_08555_BGI-A2_v1.0 120 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 169 69*****.******954...4**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	24.092	120	177	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.5E-32	120	178	IPR001471	AP2/ERF domain
CDD	cd00018	7.20E-33	120	178	No hit	No description
SuperFamily	SSF54171	4.64E-22	120	178	IPR016177	DNA-binding domain
SMART	SM00380	5.2E-38	120	183	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-11	121	132	IPR001471	AP2/ERF domain
Pfam	PF00847	8.9E-12	121	169	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-11	143	159	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0070483	Biological Process	detection of hypoxia
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MCGGAIISDF IPPSQSRRLT ADFLWPDLKK SGLKKGSGKR YSKPVIDLGD DFETDFQEFK 60 DEESDIDDYD VDDVLADVKP FAFNATKKPA SAVSHGSNSE KSMQFNGQAE KCAKRKRKNQ 120 YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY DAEARRIRGK KAKVNFPNET 180 PRTSPKRAVK TNSQKPLSKS NLSPVQLNLN QNYNYLSQPE QEYFDTMGFV EEKPLVNQFA 240 YVDPVPTSID AGFNQSDNAP LYFNSDQGSN SINCSDYGWG EQGARTPEIS SILEASVVGE 300 EFLEDANPSK KLKPSSDNVM HAEENSAKTL SDELLALDNQ MKYFQMPPFI EGNWDATIDA 360 FLNGDATQDG GNPMDLWNFD DFPAMAEGVF

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MCGGAIISDF IPPSQSRRLT ADFLWPDLKK SGLKKGSGKR YSKPVIDLGD DFETDFQEFK  60
DEESDIDDYD VDDVLADVKP FAFNATKKPA SAVSHGSNSE KSMQFNGQAE KCAKRKRKNQ  120
YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY DAEARRIRGK KAKVNFPNET  180
PRTSPKRAVK TNSQKPLSKS NLSPVQLNLN QNYNYLSQPE QEYFDTMGFV EEKPLVNQFA  240
YVDPVPTSID AGFNQSDNAP LYFNSDQGSN SINCSDYGWG EQGARTPEIS SILEASVVGE  300
EFLEDANPSK KLKPSSDNVM HAEENSAKTL SDELLALDNQ MKYFQMPPFI EGNWDATIDA  360
FLNGDATQDG GNPMDLWNFD DFPAMAEGVF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-21	120	177	2	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A	6e-21	119	179	13	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269\|PubMed:22020282, ECO:0000269\|PubMed:22530619}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00204	DAP	Transfer from AT1G53910	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269\|PubMed:22020282}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY781117	0.0	AY781117.2 Gossypium hirsutum ethylene-responsive element binding protein ERF2 mRNA, complete cds.
GenBank	KP780200	0.0	KP780200.1 Gossypium hirsutum C-repeat binding factor 17 (CBF17) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017649103.1	0.0	PREDICTED: ethylene-responsive transcription factor RAP2-12-like
Refseq	XP_017649104.1	0.0	PREDICTED: ethylene-responsive transcription factor RAP2-12-like
Swissprot	Q9SSA8	9e-91	RA212_ARATH; Ethylene-responsive transcription factor RAP2-12
TrEMBL	A0A1U8IRB1	0.0	A0A1U8IRB1_GOSHI; ethylene-responsive transcription factor RAP2-12-like
STRING	Gorai.011G056300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53910.2	1e-85	related to AP2 12

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kosmacz M, et al. The stability and nuclear localization of the transcription factor RAP2.12 are dynamically regulated by oxygen concentration. Plant Cell Environ., 2015. 38(6): p. 1094-103 [PMID:25438831] Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana. Plant Sci., 2015. 236: p. 37-43 [PMID:26025519] Gasch P, et al. Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis. Plant Cell, 2016. 28(1): p. 160-80 [PMID:26668304] Gonzali S, et al. Universal stress protein HRU1 mediates ROS homeostasis under anoxia. Nat Plants, 2015. 1: p. 15151 [PMID:27251529] Paul MV, et al. Oxygen Sensing via the Ethylene Response Transcription Factor RAP2.12 Affects Plant Metabolism and Performance under Both Normoxia and Hypoxia. Plant Physiol., 2016. 172(1): p. 141-53 [PMID:27372243] Shahzad Z, et al. A Potassium-Dependent Oxygen Sensing Pathway Regulates Plant Root Hydraulics. Cell, 2016. 167(1): p. 87-98.e14 [PMID:27641502] Yao Y, et al. ETHYLENE RESPONSE FACTOR 74 (ERF74) plays an essential role in controlling a respiratory burst oxidase homolog D (RbohD)-dependent mechanism in response to different stresses in Arabidopsis. New Phytol., 2017. 213(4): p. 1667-1681 [PMID:28164334] Giuntoli B,Licausi F,van Veen H,Perata P Functional Balancing of the Hypoxia Regulators RAP2.12 and HRA1 Takes Place in vivo in Arabidopsis thaliana Plants. Front Plant Sci, 2017. 8: p. 591 [PMID:28487707] Yao Y,Chen X,Wu AM ERF-VII members exhibit synergistic and separate roles in Arabidopsis. Plant Signal Behav, 2017. 12(6): p. e1329073 [PMID:28537474] Eysholdt-Derzsó E,Sauter M Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling. Plant Physiol., 2017. 175(1): p. 412-423 [PMID:28698356] Giuntoli B, et al. Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana. Plant Cell Environ., 2017. 40(10): p. 2333-2346 [PMID:28741696]