PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_08538_BGI-A2_v1.0 | ||||||||
Common Name | F383_22909 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YA | ||||||||
Protein Properties | Length: 331aa MW: 36569.8 Da PI: 8.1566 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.3 | 2.3e-32 | 184 | 240 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQyq+Il+RRq Rakle+++kl +k rkpylheSRh hAl+R+Rg+gGrF Cotton_A_08538_BGI-A2_v1.0 184 DEPIYVNAKQYQAILRRRQYRAKLEAQNKL-IKVRKPYLHESRHLHALKRARGNGGRF 240 79****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 6.8E-37 | 182 | 243 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.096 | 183 | 243 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.4E-26 | 185 | 240 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.1E-23 | 186 | 208 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 188 | 208 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 7.1E-23 | 217 | 240 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MQNKKDSTVS SHSMSTYVVG CSSWENSTES HVQHSSISEN LSLKMGLLPQ YLNNNKQLSF 60 QFQDQDSSST QSTCQSCPEV ASAGDSNLYE QSLISASSGG NEMHGKLVGD YTKLATSMGT 120 QECVLPPSQV DYSKSIAHIP LHYADPYFGG VVASAYTPQA MIHHQRTMAM LPARVPLPLE 180 LTQDEPIYVN AKQYQAILRR RQYRAKLEAQ NKLIKVRKPY LHESRHLHAL KRARGNGGRF 240 LNTKKLQESK GITTSNGLDT YFKSEVHQLE NYKDAASTAS CSDVTTASNS DEIFQQADFR 300 FSTYSSHIGG PMPAHTGDMQ GGGNLHHRLC G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-19 | 184 | 245 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017646766.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3 | ||||
TrEMBL | A0A1U8IJT0 | 0.0 | A0A1U8IJT0_GOSHI; nuclear transcription factor Y subunit A-3-like isoform X1 | ||||
STRING | Gorai.011G057600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3349 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 6e-78 | nuclear factor Y, subunit A3 |