PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08528_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 322aa    MW: 35908.2 Da    PI: 8.8992
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08528_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.23.8e-2573117145
                         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Cotton_A_08528_BGI-A2_v1.0  73 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEA 117
                                 79****************************************986 PP
2QLQ57.73.6e-20941234
                         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34
                                 FT++Q+q+L++Q+l++Ky+++++P+Pp+Ll  
  Cotton_A_08528_BGI-A2_v1.0  9 LFTPNQWQELEHQALIFKYMVSGVPIPPQLLYS 41
                                6*****************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.0E-10844IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.858944IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.5E-151042IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.47973117IPR014977WRC domain
PfamPF088792.8E-2174116IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MISARNKYLF TPNQWQELEH QALIFKYMVS GVPIPPQLLY SVKTSFDSSL ASHLFPHQPR  60
WGCFQVGFGR KPDPEPGRCR RTDGKKWRCS KEAYPDSKYC ERHMHRGRNR SRKPVEANSS  120
SSTAPPAPPT TAAASILSPS FPSINSNLPT SSSSLSFSPM ATENFTHFDP FLYSHSSTRL  180
HGSGLSVPSH HFLDSGTGID YPQTDKLYRY VHGTREGVDE RSFFPEASAS VRVVSDSYQP  240
LTMVQSFGDN NGSKQGQQCF VLGTDIKSAK PIKLEKDEGT QKPVHQFLGD WTQGNNNGSW  300
LDLASNSRIV EVSIMESIKA LE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016678375.10.0PREDICTED: growth-regulating factor 5-like isoform X2
RefseqXP_017647055.10.0PREDICTED: growth-regulating factor 5 isoform X2
TrEMBLA0A1U8IJT80.0A0A1U8IJT8_GOSHI; growth-regulating factor 5-like isoform X2
STRINGGorai.011G058800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45672651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.16e-61growth-regulating factor 5