PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08527_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 474aa    MW: 51804.7 Da    PI: 6.5109
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08527_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS214.27.1e-661624592288
                        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                 ++lL  cA a+++g+l++aq+lL  l+elas++gd+++Rla + ++AL ++l++s+     + +p + ++++ +    +l  f
  Cotton_A_08527_BGI-A2_v1.0 162 EQLLNPCASAITTGNLTRAQHLLYVLNELASSTGDANHRLADHGLRALTHHLSSSSA----STAPVTFASTEPKFFQRSLLKF 240
                                 689**************************************************9332....233444443445555556666* PP

                        GRAS  85 sevsPilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg......... 153
                                 +evsP++ f + +aN  Il+ +++e    + +Hi+D+++s+G+QWp+Ll+aL+ R+ ++pp +RiT+v++ +++         
  Cotton_A_08527_BGI-A2_v1.0 241 YEVSPWFAFPNTIANASILQILAQEpdktRNLHILDIGVSHGVQWPTLLEALSRRSgGPPPVVRITVVAATAENnqitdtpfs 323
                                 ***********************999887889************************55667*******997777888888887 PP

                        GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236
                                      +   +rL  fA+++++++++n l  + ++ l+ ++++ ++gE+l+V+ +++lh+l    ++ +++r+e+Lk+++sl+P
  Cotton_A_08527_BGI-A2_v1.0 324 IGPPGHDFYSRLPGFAKSMNINLQINRLENHPIQHLNAQTINNSHGETLIVCAQFRLHHLN---HNRPDQRTEFLKVLRSLEP 403
                                 777889999******************9999*****************************8...77777788*********** PP

                        GRAS 237 kvvvvveqeadhnse...sFlerflealeyysalfdsl.eaklpreseerikvEre 288
                                 k v+++e+++d++ +   +F+++f++ +ey ++++ds+ +a  +reseer+++E e
  Cotton_A_08527_BGI-A2_v1.0 404 KGVILSENNMDCSCSscgDFATGFSRRVEYLWKFLDSTsSAFKGRESEERRVMEGE 459
                                 *********9984433459*******************666667888999988866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.161135474IPR005202Transcription factor GRAS
PfamPF035142.5E-63162459IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MTLEESAEPN PSQDHILDWL EDSASLLPSF LDDPYSPGDI NGCQWWDPNH DFGQDLITIG  60
AAVASTNSPA IAAAVSNVDA GLVQSDSAIV NPPVPLSSSK RRRPTDSIVP RMSKKSSNGK  120
NDENEDGKAG VEEVMGNKRS AGNKKNKSSG NNGNNKEGRW AEQLLNPCAS AITTGNLTRA  180
QHLLYVLNEL ASSTGDANHR LADHGLRALT HHLSSSSAST APVTFASTEP KFFQRSLLKF  240
YEVSPWFAFP NTIANASILQ ILAQEPDKTR NLHILDIGVS HGVQWPTLLE ALSRRSGGPP  300
PVVRITVVAA TAENNQITDT PFSIGPPGHD FYSRLPGFAK SMNINLQINR LENHPIQHLN  360
AQTINNSHGE TLIVCAQFRL HHLNHNRPDQ RTEFLKVLRS LEPKGVILSE NNMDCSCSSC  420
GDFATGFSRR VEYLWKFLDS TSSAFKGRES EERRVMEGEA AKALTNQGEM NEGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-2715846630339Protein SHORT-ROOT
5b3h_E3e-2715846630339Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017646971.10.0PREDICTED: LOW QUALITY PROTEIN: nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A1U8IJV40.0A0A1U8IJV4_GOSHI; nodulation-signaling pathway 1 protein-like
STRINGGorai.011G058900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107472834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-139GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]