PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08496_BGI-A2_v1.0
Common NameF383_15204
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 794aa    MW: 87530.8 Da    PI: 6.4308
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08496_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.6e-09747792447
                                 S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
             Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                 WT eE++ l+++ + +G+  Wk+I +      k+Rt  ++k++w+++
  Cotton_A_08496_BGI-A2_v1.0 747 WTLEEEQALIKGYRVYGPQ-WKLIRESYWdilKKRTQVDLKDKWRNL 792
                                 *****************88.*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.796739794IPR017930Myb domain
SuperFamilySSF466894.32E-10746792IPR009057Homeodomain-like
PfamPF139212.2E-7747793No hitNo description
Gene3DG3DSA:1.10.10.601.6E-9747792IPR009057Homeodomain-like
CDDcd116603.50E-15747794No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MGDSFPLFND CDPAVLSTLK QYLSQPNNND EDNGDGYATF CFHYKGAILR SIEQRTGNST  60
VPDAVLDSLI LIENLDRRRG FLPSESMKAA FCAVAVHCTV SCLPVSWDNY FDAFQRIWGL  120
RIKSLEESGK SDLISSELVQ WGTVIEAGLW DLETSQRLSS VNTRGKALLR IKGYLEEAFR  180
SMNPALSQLA SASTTEPTVD HVASANPHPS TDEGNMDNVV SASAQVPSSP HPCIDERNMD  240
NVVYSSAQVP SSPHPCSDEG NKIRRASFQA RHKPRPRCKQ RRGVVITDME EDQPLCIKNG  300
TPSSFEVNGC LQVSSKTRSA ALLDGVTDSP FEALEVVETV ASVMAGKNFC PKGSMEDSNK  360
DKGDPTASFY PTTHHCTDKG KQIQMVNSQT SGNPNSSHRH CEEPAAIADT EEDRVLSTPN  420
IDKLRDALTS SVVDLTASVT DPLPKALEVA ERLVSFMEAA KSLSAEGAEG DVRKEKGVPA  480
APMNCNFERA QAERREPDKA IREDQDKMNR SVPADLTATV ADSLPKALEV AERLVSFMAA  540
AKSLSTEGAE GDVRKEKGVP AAPMNCNFEQ AQAERRAPDK AIREDQDKMG RSVPASSVGH  600
SVQPSQATEG NETFIRPKKV PKRNLMKRND AAHTHEGRAP YEGIREDYNK VDGSVPAPSV  660
NHIAEPSHAK EGNEAVIRPK KVRKRSIMER NDTAHTSEWE DSIDGSDGGT SGCSNRCTLP  720
SPKTNHVSPL KESEPQKQKN RRKTNWWTLE EEQALIKGYR VYGPQWKLIR ESYWDILKKR  780
TQVDLKDKWR NLSK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017615537.10.0PREDICTED: uncharacterized protein LOC108460533 isoform X1
TrEMBLA0A0B0MBZ00.0A0A0B0MBZ0_GOSAR; Telomeric DNA-binding factor trf1
STRINGGorai.011G008700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2214245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.13e-12TRF-like 5