PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08468_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 350aa    MW: 39653.4 Da    PI: 6.3888
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08468_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.2e-092773112155
                                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                 k +yps++++  LA+++gL+++q+ +WF N+R ++
  Cotton_A_08468_BGI-A2_v1.0 277 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 311
                                 569*****************************885 PP

2ELK35.62e-12231252122
                         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                 ELK+ Ll+ YsgyLgsLkqEF+
  Cotton_A_08468_BGI-A2_v1.0 231 ELKDKLLQRYSGYLGSLKQEFM 252
                                 9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.1E-2192136IPR005540KNOX1
PfamPF037902.3E-2394132IPR005540KNOX1
SMARTSM012563.9E-25142193IPR005541KNOX2
PfamPF037914.4E-21146192IPR005541KNOX2
PfamPF037892.3E-10231252IPR005539ELK domain
SMARTSM011883.1E-7231252IPR005539ELK domain
PROSITE profilePS5121311.121231251IPR005539ELK domain
PROSITE profilePS5007112.989251314IPR001356Homeobox domain
SMARTSM003897.4E-13253318IPR001356Homeobox domain
SuperFamilySSF466892.91E-19253326IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-28256316IPR009057Homeodomain-like
CDDcd000862.13E-12263315No hitNo description
PfamPF059206.2E-17271310IPR008422Homeobox KN domain
PROSITE patternPS000270289312IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEGGSNSTSC MLAFGHNNNT CNGPCHVSMM PSMSSHHHHM DSNNPLFLPL PPTNNQDPNH  60
NSTSGSPSMI LNNTGCYFME NNNNDDDGSS SSSMKAKIMS HPHYHRLLAA YVNCQKVGAP  120
PEVVARLEEA CATAATVGGT SSTSYIGEDP ALDQFMEAYC EMLIKYEQEL SKPFKEAMVF  180
LQRIECQFKA LTVSSSNSAY GTETFERNGS SEEETDVNNK SFIDPLAEDR ELKDKLLQRY  240
SGYLGSLKQE FMKKRKKGKL PKEARQQLLD WWSRHYKWPY PSESQKLALA ESTGLDQKQI  300
NNWFINQRKR HWKPSEDMQF VVMDGTHNQH YFMDNVIGNA FPMDLNPTYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246255LKQEFMKKRK
2252256KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017616077.10.0PREDICTED: homeobox protein SBH1-like
SwissprotP466081e-146HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A2P5VS090.0A0A2P5VS09_GOSBA; Uncharacterized protein
STRINGGorai.011G011700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-133KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]