PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_08468_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 350aa MW: 39653.4 Da PI: 6.3888 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.8 | 2.2e-09 | 277 | 311 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ Cotton_A_08468_BGI-A2_v1.0 277 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 311 569*****************************885 PP | |||||||
2 | ELK | 35.6 | 2e-12 | 231 | 252 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+ Ll+ YsgyLgsLkqEF+ Cotton_A_08468_BGI-A2_v1.0 231 ELKDKLLQRYSGYLGSLKQEFM 252 9********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.1E-21 | 92 | 136 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.3E-23 | 94 | 132 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.9E-25 | 142 | 193 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.4E-21 | 146 | 192 | IPR005541 | KNOX2 |
Pfam | PF03789 | 2.3E-10 | 231 | 252 | IPR005539 | ELK domain |
SMART | SM01188 | 3.1E-7 | 231 | 252 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.121 | 231 | 251 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.989 | 251 | 314 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.4E-13 | 253 | 318 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.91E-19 | 253 | 326 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-28 | 256 | 316 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.13E-12 | 263 | 315 | No hit | No description |
Pfam | PF05920 | 6.2E-17 | 271 | 310 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 289 | 312 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 350 aa Download sequence Send to blast |
MEGGSNSTSC MLAFGHNNNT CNGPCHVSMM PSMSSHHHHM DSNNPLFLPL PPTNNQDPNH 60 NSTSGSPSMI LNNTGCYFME NNNNDDDGSS SSSMKAKIMS HPHYHRLLAA YVNCQKVGAP 120 PEVVARLEEA CATAATVGGT SSTSYIGEDP ALDQFMEAYC EMLIKYEQEL SKPFKEAMVF 180 LQRIECQFKA LTVSSSNSAY GTETFERNGS SEEETDVNNK SFIDPLAEDR ELKDKLLQRY 240 SGYLGSLKQE FMKKRKKGKL PKEARQQLLD WWSRHYKWPY PSESQKLALA ESTGLDQKQI 300 NNWFINQRKR HWKPSEDMQF VVMDGTHNQH YFMDNVIGNA FPMDLNPTYL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 246 | 255 | LKQEFMKKRK |
2 | 252 | 256 | KKRKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017616077.1 | 0.0 | PREDICTED: homeobox protein SBH1-like | ||||
Swissprot | P46608 | 1e-146 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A0A2P5VS09 | 0.0 | A0A2P5VS09_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G011700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6473 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-133 | KNOX/ELK homeobox transcription factor |
Publications ? help Back to Top | |||
---|---|---|---|
|