PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_08437_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 173aa MW: 18943.1 Da PI: 6.7436

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_08437_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.2	1.7e-44	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +CaaCk lrrkC +dC++apyfp e+p+kf nvhk+FGasnv+kll+++p+++reda++sl+yeAear++dPvyG+vg i+ l Cotton_A_08437_BGI-A2_v1.0 10 PCAACKCLRRKCMPDCIFAPYFPPEEPQKFINVHKIFGASNVSKLLNDVPPHQREDAVNSLAYEAEARMKDPVYGCVGAISVL 92 7******************************************************************************** PP DUF260 84 qqqleqlkaelallke 99 q+q+++l++el+++++ Cotton_A_08437_BGI-A2_v1.0 93 QRQVMRLQKELDATNA 108 *********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.427	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.6E-44	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MASSSYSNPP CAACKCLRRK CMPDCIFAPY FPPEEPQKFI NVHKIFGASN VSKLLNDVPP 60 HQREDAVNSL AYEAEARMKD PVYGCVGAIS VLQRQVMRLQ KELDATNADI IRYAYNEMPQ 120 PPQPPAASQY GGRRTAAGHG SSGGGSFDQN SGFYYPSQWN NNDPSGDNES GSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-64	10	118	11	119	LOB family transfactor Ramosa2.1
5ly0_B	4e-64	10	118	11	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582213	1e-158	JX582213.1 Gossypium hirsutum clone NBRI_GE15003 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458035.1	1e-127	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_012458036.1	1e-127	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_012458037.1	1e-127	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_016679016.1	1e-127	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_016679017.1	1e-127	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_017614825.1	1e-127	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_017614826.1	1e-127	PREDICTED: LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	8e-66	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A0D2RYJ3	1e-126	A0A0D2RYJ3_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8ILK5	1e-126	A0A1U8ILK5_GOSHI; LOB domain-containing protein 25-like
TrEMBL	A0A2P5XNB6	1e-126	A0A2P5XNB6_GOSBA; Uncharacterized protein
STRING	Gorai.012G063800.1	1e-127	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	2e-67	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]