PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_08309_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YC | ||||||||
Protein Properties | Length: 258aa MW: 28496.2 Da PI: 6.0132 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 171.2 | 1.2e-53 | 82 | 186 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdia 80 ql+ fw++q ie+atdfknh+lPlarikki+kadedv+misaea v++++ace+fileltlrsw+h+eenkrrtl+k+di Cotton_A_08309_BGI-A2_v1.0 82 QLQRFWANQyqeIEQATDFKNHSLPLARIKKIMKADEDVRMISAEALVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIG 164 89******9999*********************************************************************** PP NF-YC 81 aavtrtdifdflvdivprdelk 102 aa+trtdifdflvdivpr+++k Cotton_A_08309_BGI-A2_v1.0 165 AAITRTDIFDFLVDIVPREDIK 186 ******************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.01E-32 | 35 | 176 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-20 | 104 | 167 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.5E-36 | 105 | 182 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDQQGHGQTS AMGIVGSAAA VPYGITGYQP NQMMGTSTPG SVGSVRPPTQ PAGPSASSAQ 60 LAQQQLAYQH IHQQQQQQLQ QQLQRFWANQ YQEIEQATDF KNHSLPLARI KKIMKADEDV 120 RMISAEALVV FARACEMFIL ELTLRSWNHT EENKRRTLQK NDIGAAITRT DIFDFLVDIV 180 PREDIKDEVL ASVPRVEGPA DGLPYYYMPP QLAPQAGAPG MTVGKPVMDP NFYGQKSGPY 240 AGQPVWPPQQ QQQPPPDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-60 | 90 | 182 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 160 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017633644.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-3-like | ||||
Swissprot | Q8L4B2 | 7e-83 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A1U8MZ17 | 0.0 | A0A1U8MZ17_GOSHI; nuclear transcription factor Y subunit C-3-like | ||||
STRING | Gorai.005G040900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 5e-73 | nuclear factor Y, subunit C9 |