PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08273_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 705aa    MW: 79633.6 Da    PI: 6.5698
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08273_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.7e-23145247199
                                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                 f k+ltpsd++++g +++pk+++++       +++++ +++l+  d++g +W++++iyr++++r++lt+GW+ F  +++L +g
  Cotton_A_08273_BGI-A2_v1.0 145 FSKKLTPSDTSTHGGFSIPKRHVDDGwippldMSQQTPQQELVAIDLHGFEWRFRHIYRGQPKRHLLTSGWSTFLTSKKLLAG 227
                                 88*********************888*****9555555679****************************************** PP

                                 -EEEEEE-SSSEE..EEEEE-S CS
                          B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                 D ++F   + +++el+++++r+
  Cotton_A_08273_BGI-A2_v1.0 228 DECIFL--RGEKGELRLGIRRA 247
                                 ******..449999******97 PP
2Auxin_resp103.13.6e-34272354183
                  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                 a ha+st+s+F+v Y+P++++seF++++++++k+ ++ +++G+Rf+m++e+e+++e+r sGt+++++d+d +rWpnS+Wr+Lk
  Cotton_A_08273_BGI-A2_v1.0 272 AFHAFSTRSMFNVNYRPWSTSSEFIISLDRYMKSAQIDYCIGTRFRMRLEGEECAEQRPSGTIISIEDVDHTRWPNSEWRCLK 354
                                 679******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-32137274IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-33143258IPR015300DNA-binding pseudobarrel domain
CDDcd100175.00E-19144246No hitNo description
SMARTSM010191.3E-17145248IPR003340B3 DNA binding domain
PROSITE profilePS5086312.435145248IPR003340B3 DNA binding domain
PfamPF023625.3E-20145247IPR003340B3 DNA binding domain
PfamPF065072.1E-30272354IPR010525Auxin response factor
PROSITE profilePS5174515.806603686IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MDGERNGLKA KVPFHPRRRS NVYGLPLLPP NNQGEKDDLH VQLWHACAGP SVYVPHAGEK  60
VLYFPQAHIE QVDACMNQDG IMEMPIYNLP SKILCRVMHV QLKVEPGTDE VFAQITLIPE  120
AEQDEESLEH RNYQPLPQKA YPVFFSKKLT PSDTSTHGGF SIPKRHVDDG WIPPLDMSQQ  180
TPQQELVAID LHGFEWRFRH IYRGQPKRHL LTSGWSTFLT SKKLLAGDEC IFLRGEKGEL  240
RLGIRRATTV LKYTSTSVIS GHSMRHGILA SAFHAFSTRS MFNVNYRPWS TSSEFIISLD  300
RYMKSAQIDY CIGTRFRMRL EGEECAEQRP SGTIISIEDV DHTRWPNSEW RCLKVKWDLT  360
AGENFHPERV CPWNIEPTEF SIKKRPSILR NQKKARTDDV SSPGFSTLLM DGMWSGSIKY  420
ESQSSSGVLQ GQEDSDTDGN QPDALRQPLP HCLPLNHSWD SMQQPIQNQR EIGAAPFSGG  480
QVESLGLHNS WSTTFSSSNG VHEDAIASRK ISVPNVNSQE WSISEPRNEN ETSWCEPKEG  540
HACMLFGVNL VTGPLEPPSP QLVTSSELES HCSIPPTSQS TVSKPSKGTS SKQCDNCCSA  600
SNWSCTKVLK HGTALGRSVD ITRFDGYKDL ISELDRMFDF NGRLIDGSSG WHVTFTDDIG  660
EMRMIGDHYP WQKFQNEVRR MLINPKEEIG RVNQSSLLAP YDEVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1253737717354Auxin response factor 1
4ldw_A1e-1253737717354Auxin response factor 1
4ldw_B1e-1253737717354Auxin response factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628563.10.0PREDICTED: auxin response factor 23-like
TrEMBLA0A1U8L2E90.0A0A1U8L2E9_GOSHI; Auxin response factor
STRINGGorai.007G131900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157971016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.21e-151auxin response factor 1