PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_08147_BGI-A2_v1.0

Common Name

F383_04755

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 971aa MW: 106588 Da PI: 5.2182

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_08147_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.6	2.4e-28	580	630	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+R+i+++ Cotton_A_08147_BGI-A2_v1.0 580 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRRINKV 630 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.359	569	650	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-25	583	630	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.52E-23	866	958	No hit	No description
SMART	SM00666	1.9E-24	875	957	IPR000270	PB1 domain
PROSITE profile	PS51745	23.273	875	957	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.0E-25	875	955	No hit	No description
Pfam	PF00564	4.4E-18	876	956	IPR000270	PB1 domain
CDD	cd06407	2.98E-35	876	955	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 971 aa Download sequence Send to blast
MCEPEEDKAC PFPPKQQPQG IMDSVDDDDD DGVDLHNSWP LDQLTFLSNP PSPFIISSSE 60 QPFSPLWTFS DEDSKLGSAA GYNLFLTCTS NSVNENPKED DNKRGLSSPF LGPVPLENPD 120 SYCAMKERMT QALRYFKEST QQHVLAQVWA PIKTGGRYVL TTSGQPFVLD PNSNGLHQYR 180 MVSLMYMFSV DGESDKQLGL PGRVFLQKLP EWTPNVQYYS SKEYSRLGHA LHYNVQGTLA 240 LPVFEPSMQS CVGVLELIMT SQKINYAPEV DKVCRALQAV NLKSSEILDH PITQICNKSR 300 QNALAEILEI LTIVCENHKL PLAQTWVPCQ HRSVLAYGGG LKRSCTSFDG SCMGQVCMST 360 TDLASYVVDA HTWGFREACL EHHLQKGQGV AGRAFLCHNS CFCADITQFC KTEYPLVHYA 420 RMFGLTACFA ICLRSAYTGD DDYVLEFFLP SAIVDSNEQR TLLGSILATM KQHFRSLKVA 480 SGAKLEESEG FIQIIEASSD ERHDSILESV PIPPSVKSPP GINTSPDREL QLDSSRQHLT 540 MNLDPATTGG SVAASRSDKP VCLPQNKDGK KLERKRGKTE KSISLEVLQQ YFAGSLKDAA 600 KSLGVCPTTM KRICRQHGIS RWPSRRINKV NRSLSKLKCV IESVQGTTDS TFGLASLASS 660 PLPVTVGSVS WPSSLKGSNQ QNSPKSKPLE PQGEKDDSTQ GSNGQALVED WLLGGRTSSQ 720 ELFPQLNGLS PNMDEREEVM RCQREESADM PTSRGLCQGN PEIESACTKD PLNSIQCFKA 780 HSPPEFAFQT LGGLNVSATF SMPEALLATE CQEPFGGMLV EGAGSSKDLR NLCPSAAEAA 840 VDETPPPYSD LALKQATTTY TRSTPNLTAR QGKTSVTVKA TYREDIIRFR ISLTSGIVEL 900 KEEVAKRLKL DVGTFEIKYL DEDNEWVLIA CDSDLQECLD VSISSGSNMV RLSVQSAMAN 960 LGSSCESTGV L

Sequence ? help Back to Top

Protein Sequence Length: 971 aa Download sequence Send to blast

MCEPEEDKAC PFPPKQQPQG IMDSVDDDDD DGVDLHNSWP LDQLTFLSNP PSPFIISSSE  60
QPFSPLWTFS DEDSKLGSAA GYNLFLTCTS NSVNENPKED DNKRGLSSPF LGPVPLENPD  120
SYCAMKERMT QALRYFKEST QQHVLAQVWA PIKTGGRYVL TTSGQPFVLD PNSNGLHQYR  180
MVSLMYMFSV DGESDKQLGL PGRVFLQKLP EWTPNVQYYS SKEYSRLGHA LHYNVQGTLA  240
LPVFEPSMQS CVGVLELIMT SQKINYAPEV DKVCRALQAV NLKSSEILDH PITQICNKSR  300
QNALAEILEI LTIVCENHKL PLAQTWVPCQ HRSVLAYGGG LKRSCTSFDG SCMGQVCMST  360
TDLASYVVDA HTWGFREACL EHHLQKGQGV AGRAFLCHNS CFCADITQFC KTEYPLVHYA  420
RMFGLTACFA ICLRSAYTGD DDYVLEFFLP SAIVDSNEQR TLLGSILATM KQHFRSLKVA  480
SGAKLEESEG FIQIIEASSD ERHDSILESV PIPPSVKSPP GINTSPDREL QLDSSRQHLT  540
MNLDPATTGG SVAASRSDKP VCLPQNKDGK KLERKRGKTE KSISLEVLQQ YFAGSLKDAA  600
KSLGVCPTTM KRICRQHGIS RWPSRRINKV NRSLSKLKCV IESVQGTTDS TFGLASLASS  660
PLPVTVGSVS WPSSLKGSNQ QNSPKSKPLE PQGEKDDSTQ GSNGQALVED WLLGGRTSSQ  720
ELFPQLNGLS PNMDEREEVM RCQREESADM PTSRGLCQGN PEIESACTKD PLNSIQCFKA  780
HSPPEFAFQT LGGLNVSATF SMPEALLATE CQEPFGGMLV EGAGSSKDLR NLCPSAAEAA  840
VDETPPPYSD LALKQATTTY TRSTPNLTAR QGKTSVTVKA TYREDIIRFR ISLTSGIVEL  900
KEEVAKRLKL DVGTFEIKYL DEDNEWVLIA CDSDLQECLD VSISSGSNMV RLSVQSAMAN  960
LGSSCESTGV L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017607823.1	0.0	PREDICTED: protein NLP6-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A0B0PFM0	0.0	A0A0B0PFM0_GOSAR; Protein NLP7-like protein
STRING	Gorai.006G206500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]