PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_08143_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 246aa MW: 27549.1 Da PI: 7.9071

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_08143_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.7	5.1e-38	31	91	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++al+cprC+s+ntkfCyynnysl qPryfCk+CrryWt+GG+lrn+PvGg +rknk+ s Cotton_A_08143_BGI-A2_v1.0 31 KQQALNCPRCNSMNTKFCYYNNYSLRQPRYFCKTCRRYWTEGGSLRNIPVGGCSRKNKRPS 91 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.7E-32	33	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.379	35	89	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-21	35	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MDTALWPQEI VTNACSKPAD LERKAAAKPQ KQQALNCPRC NSMNTKFCYY NNYSLRQPRY 60 FCKTCRRYWT EGGSLRNIPV GGCSRKNKRP SSSSKKLPDL VNNPKIHGGQ DLNLAYPVSE 120 VYTTSMSEFV EVPNSSVENN KKEIPPSLFP RCHVSALELV TGMSSKGSDP FIPMPVPDPN 180 TVYTPGFPLQ EYKPTLNFCV DEVEETNGRL LFPFQDLKQT TDNEDNKEQG DSSAGFWNGM 240 LGGASW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX618042	1e-148	JX618042.1 Gossypium hirsutum clone NBRI_GE63365 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017610121.1	0.0	PREDICTED: dof zinc finger protein DOF1.8-like isoform X1
Swissprot	Q8LAP8	6e-48	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A1U8LVK8	0.0	A0A1U8LVK8_GOSHI; dof zinc finger protein DOF1.8-like isoform X2
STRING	Gorai.006G206100.1	1e-166	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	1e-45	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]