PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08128_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 406aa    MW: 46476.8 Da    PI: 6.4483
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08128_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.83.1e-51161461128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknrat 78 
                                 +ppGfrFhPt+eel+++yL+kkv+++k++l +vi+evd++k+ePwd+++     + ++ ++ wyfFs++dkky+tg+r+nrat
  Cotton_A_08128_BGI-A2_v1.0  16 VPPGFRFHPTEEELLHYYLRKKVASQKIDL-NVIPEVDLNKLEPWDIQEkckvgSSSTPQNGWYFFSHKDKKYPTGTRTNRAT 97 
                                 69****************************.99**************953544322335569********************* PP

                         NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 ++g+Wkatg+dk +++ + + +gl+ktLvfykgrap+g+k+dW+mheyrl
  Cotton_A_08128_BGI-A2_v1.0  98 AAGFWKATGRDKIIYC-ELRRIGLRKTLVFYKGRAPHGKKSDWIMHEYRL 146
                                 ****************.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-5711175IPR003441NAC domain
PROSITE profilePS5100556.03816175IPR003441NAC domain
PfamPF023655.8E-2717146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MPSADMNLSI NGQSQVPPGF RFHPTEEELL HYYLRKKVAS QKIDLNVIPE VDLNKLEPWD  60
IQEKCKVGSS STPQNGWYFF SHKDKKYPTG TRTNRATAAG FWKATGRDKI IYCELRRIGL  120
RKTLVFYKGR APHGKKSDWI MHEYRLDDDS NVQSSKTIGD SMAEDGWVVC RVFRKKNYQK  180
TLEDPKSSSS YTSPGPKAPM VFSGNEEVLD QVLQYMGKTC KMENDLFTST NNPRSFEENK  240
HEMFMHMPRL ESPTLPPLPI HSSLLDQETS FKPCYQSTDD TLITVTQPSS INQGDSGAYD  300
HHQTDSVIDD NNESKNIWVN DWVTLDRFVA SQLNGQVETS KQQSYLTDPS VVFSLCHHDD  360
IQLSNIRLER SNQNSQVYSD EIDLWSLTKS SSPSSSLDPF NHCRYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-501217711170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6149481e-100JX614948.1 Gossypium hirsutum clone NBRI_GE58687 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610421.10.0PREDICTED: NAC domain-containing protein 43-like
SwissprotQ84WP61e-114NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A1U8LV410.0A0A1U8LV41_GOSHI; NAC domain-containing protein 43-like
STRINGGorai.006G205300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77828124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-104NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]