PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08115_BGI-A2_v1.0
Common NameF383_19382
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 559aa    MW: 62297.8 Da    PI: 4.6081
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08115_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.31.5e-5391371128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                 lp GfrF+Ptd+el+++yL+ k++g+++++ e+i+e+d++k+ePwdLp  +++k+++ ew+fF++ d+ky+tg+r nrat++g
  Cotton_A_08115_BGI-A2_v1.0   9 LPLGFRFRPTDQELIDFYLRSKINGNRNDEIEIIREIDVCKCEPWDLPdlSAIKTQDPEWFFFCPLDRKYPTGNRLNRATDAG 91 
                                 699************************999999**************96448888999************************* PP

                         NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 yWkatgkd++++s +++l+g+kktLvfy+grap+g++t+Wvmheyr 
  Cotton_A_08115_BGI-A2_v1.0  92 YWKATGKDRKIKS-GSTLIGMKKTLVFYNGRAPRGKRTNWVMHEYRT 137
                                 *************.99*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-606160IPR003441NAC domain
PROSITE profilePS5100557.289160IPR003441NAC domain
PfamPF023655.0E-2710136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MGVLLLNSLP LGFRFRPTDQ ELIDFYLRSK INGNRNDEIE IIREIDVCKC EPWDLPDLSA  60
IKTQDPEWFF FCPLDRKYPT GNRLNRATDA GYWKATGKDR KIKSGSTLIG MKKTLVFYNG  120
RAPRGKRTNW VMHEYRTTLD ELDGTKPGQN AFVICRLFKK QDETIEDING DEVDPSVLSP  180
TEDMVSELEV PQDSPTVKQE AEKACDTSET CLASLPDEVI SNAVAPIVEG NSDNHDNYNK  240
IDQVAEIAPA EVDLLEEALN HFYDPMMEPL FSPLHNQIEA EQAPWMFDHV GNCSNVEFGH  300
GTNENDPYIS NFLESILKNS DDYHGDDTGS QKNSESETHT TMTIGKDGGF CSESGSEVTQ  360
VLLGTDTVNG VPPLGTAQDC GIPICMQDVY FSGTVPFYNV PNSDGELFSN HMNTSCDVDG  420
AITGIRTRSR PSRSQLDSEN PLAQGNASRR LRLQCKLQVH SLHCDNAIYN RSDVEIEDDS  480
KSVVTKEEKV VEKDITVSCN ADFGIVLGSK TIVSARKETS SRWSKVFSVH HSRKPFAVGF  540
RVAVMLILFI VLISTPKAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-43816314171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472080.0KC847208.1 Gossypium hirsutum NAC domain protein NAC31 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017607896.10.0PREDICTED: NAC domain-containing protein 62-like
TrEMBLA0A0B0NSL00.0A0A0B0NSL0_GOSAR; NAC domain-containing 78-like protein
STRINGGorai.006G203800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.11e-86NAC domain containing protein 62