PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08081_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 339aa    MW: 38116.2 Da    PI: 4.5788
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08081_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-19111160255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Cotton_A_08081_BGI-A2_v1.0 111 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 160
                                 89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.6E-30110167IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-21111167IPR016177DNA-binding domain
PfamPF008478.8E-13111160IPR001471AP2/ERF domain
CDDcd000182.53E-33111167No hitNo description
PROSITE profilePS5103223.657111168IPR001471AP2/ERF domain
SMARTSM003803.9E-38111174IPR001471AP2/ERF domain
PRINTSPR003673.6E-10112123IPR001471AP2/ERF domain
PRINTSPR003673.6E-10134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDQDLLCPIT YIQRKTVTKM FRKPPSKPTK IVRVSVTDPD ATDSSSDEED YFFVPRRRVK  60
RYVNEISIEP APCKSTASTT VPNNNSNRKR TATDVADSNR RPLKLSSSGR KFRGVRQRPW  120
GKWAAEIRDP ARRVRLWLGT YDTAEEAAMV YDNAAIKLRG PDALTNFITP PAKESIGKPE  180
NINVPSVSGY QSGEDSPRNL SSPTSVFNFE TQSTEDTAVE PERTVHELQE GESKPPPARQ  240
EPSNDSGDYL PLDFPFLDDF FNNPVPVLSL FDETSTNFSD GKVINQHFDD ILINTSRDFE  300
CYLPSSSSSE SISQVDDQVN DYFEEIGDLF LLDPLVSNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21107167162ATERF1
3gcc_A1e-21107167162ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610252.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A2P5XNR10.0A0A2P5XNR1_GOSBA; Uncharacterized protein
STRINGGorai.006G200400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-61cytokinin response factor 4