PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08063_BGI-A2_v1.0
Common NameF383_29515
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 468aa    MW: 51687.9 Da    PI: 4.9381
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08063_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96.3e-12128150426
                                 ---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                 e C ++++tG Ck+G++CkF+H+
  Cotton_A_08063_BGI-A2_v1.0 128 ESCAYYMKTGLCKFGSNCKFNHP 150
                                 67********************8 PP
2zf-CCCH34.92.5e-11174197326
                                 S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                 + +C++++rtG Ck+G+ C+F+H+
  Cotton_A_08063_BGI-A2_v1.0 174 QTECKYYLRTGGCKFGNACRFNHS 197
                                 568********************8 PP
3zf-CCCH38.61.7e-12220243326
                                 S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                 +++C++++r+G CkyG++C+F+H+
  Cotton_A_08063_BGI-A2_v1.0 220 EKECPYYMRNGSCKYGANCRFNHP 243
                                 689********************9 PP
4zf-CCCH26.88.7e-09355381127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                 +++++C++f++tG Ck+ ++Ck++H++
  Cotton_A_08063_BGI-A2_v1.0 355 PGQPECSYFLKTGDCKFKSNCKYHHPK 381
                                 5789*********************96 PP
5zf-CCCH35.12.2e-11402427227
                                 -S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                 ++ +C++++r+G+Ck+G+ CkF H++
  Cotton_A_08063_BGI-A2_v1.0 402 DQTICSHYSRYGICKFGPACKFDHSK 427
                                 5789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.164124152IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-7124152IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4124151IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9128150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5129149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878171199IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-5171198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6174199IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-9175197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5177197IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-7217244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.126217245IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6219244IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-10220243IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5223242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333354382IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4354381IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-6356381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5358383IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784400428IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-5400427IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6401429IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8403427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5405429IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MSQSEETPVP DTTPTDSTPH LGLQSPDPDS TSSPDLSPYD LNHSAVETEH EESSLQQQLQ  60
NLDLKEEEEE TDRKDDGERE SNNDADGNAA EDEDDENEEE RNDNEIDGEN VKQSEGKRSH  120
YPVRPDAESC AYYMKTGLCK FGSNCKFNHP IRRTTQAVKE KVKEEVESTE KPSQTECKYY  180
LRTGGCKFGN ACRFNHSTAK SSTSPILELN FLGLPIRRGE KECPYYMRNG SCKYGANCRF  240
NHPDPTAAGA CDPTSRYGNG GSVSPQAASQ VNMVPWSSPR ALNETAAYIP IMFSPPQVVP  300
PPNPEWNGYQ ATVYPPPERS LHPAPAYVMN NPATETAVYT HNQPQMVADE FPARPGQPEC  360
SYFLKTGDCK FKSNCKYHHP KNRVAKMAPC VLSDKGLPLR PDQTICSHYS RYGICKFGPA  420
CKFDHSKQEA PSTMAMAGLD QPPPFSHSAA TEQTGIASGT DTAVQQPV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5906580.0JX590658.1 Gossypium hirsutum clone NBRI_GE25620 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634463.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1
SwissprotQ9STM41e-144C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0B0MRY10.0A0A0B0MRY1_GOSAR; Uncharacterized protein
STRINGGorai.008G204400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-131C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]