PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07921_BGI-A2_v1.0
Common NameF383_26729
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 482aa    MW: 53469.7 Da    PI: 4.9038
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07921_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.14.6e-36161072102
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k+y++++d++++ ++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++
  Cotton_A_07921_BGI-A2_v1.0  16 FLSKTYDMVDDPATDAIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANE 89 
                                 9********************999*****************************************999.........****** PP

                                 XXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                                  F +g+k+ll++i r+k 
  Cotton_A_07921_BGI-A2_v1.0  90 GFLRGQKHLLRNISRRKP 107
                                 ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.18E-3611105IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.4E-4012105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.7E-6612105IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3216105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-211639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-215466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-216779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MPQPVAGHSA NGPPPFLSKT YDMVDDPATD AIVSWSPTNN SFVVWNPPEF ARDLLPKYFK  60
HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKHLLR NISRRKPAHG HGHQQTQQPH  120
GQSSSMGACV EVGKFGLEEE VERLKRDKNV LMQELVRLRQ QQQTTDNQLQ NMVQRLQGME  180
QRQQQMMSFL AKAVQSPSFF AQFVHQQNES NRRISETNKK RRLKQDGIID KDHSTASDGQ  240
IVKYQPLMND AKAMLMQMMK GDASPRLDSF NNSNEHTLIG DGSSSSSGLD GGNSSSRVSG  300
VTLQEVSPTS GISGHCPSAA ISEIQSSPCT TSSERITTAE LPDVSALIGA EKPPSVSVTQ  360
TDIIMPDLSQ ISEMVPESFV DIPTEMGNDG LIDPDTLAVN GLLSIELDEI GSDPDIDALL  420
VNSPFFHDLF PSPVCEEIES TSMEGKSKEN EGQAMDDGWD KYQHMDKLTE QMGLLRSENK  480
GI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-29110512129Heat shock factor protein 1
5d5v_B2e-29110512129Heat shock factor protein 1
5d5v_D2e-29110512129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217224NKKRRLKQ
2218223KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674060.0KR067406.1 Gossypium hirsutum HSF25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637854.10.0PREDICTED: heat shock factor protein HSF8 isoform X1
SwissprotQ401520.0HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A0B0MVA80.0A0A0B0MVA8_GOSAR; Heat shock factor HSF8
STRINGGorai.008G225200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-129heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]