PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07914_BGI-A2_v1.0
Common NameF383_16300
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 303aa    MW: 34081.1 Da    PI: 8.1349
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07914_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-1496147155
                                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Cotton_A_07914_BGI-A2_v1.0  96 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 147
                                 79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.2E-1494151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-1394151No hitNo description
SuperFamilySSF474597.42E-1794165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.19995146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1196147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-10101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MTLETLSSND LLNFVIYDTI SATPYSGNDS FMTTFSMEEQ STSTALNCFP MVTPPQCCRS  60
TATEAVERRP NLAVQGRKKR RRKPRLCKNK EEAETQRMTH IAVERNRRKQ MNEHLAVLRS  120
LMPESYVQRG DQASIVGGAI EFVKELEHLL QTLEAEKFRV LQQVTPAAAA NEETTNTNSK  180
MLSSPPFAQF LMQPQYTWSQ IPNKYTSKTK ASIADIEVTL IETHANLRIL LRKGPTQLSK  240
LVAGFQSLFL SILHLNVTTL DPFVLYSISA KVDEGCQLSS VDDIARAVHH MIRIIEQDAT  300
ALC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17682RKKRRRK
27683RKKRRRKP
37782KKRRRK
496107RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431650.0AC243165.1 Gossypium hirsutum clone MX179E13-jom, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636626.10.0PREDICTED: transcription factor bHLH71-like
SwissprotQ56XR01e-75BH071_ARATH; Transcription factor bHLH71
TrEMBLA0A0B0NCI00.0A0A0B0NCI0_GOSAR; Transcription factor bHLH71-like protein
STRINGGorai.008G225800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103892535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.11e-71beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]