PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07894_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 375aa    MW: 42948.2 Da    PI: 6.3696
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07894_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.65e-53551821128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksg 81 
                                 lppGfrFhPtdeel+ +yLk+k+eg ++el evi+ +d+yk++PwdLp k  + +++ ew+fF++rd+ky++g+r+nratk+g
  Cotton_A_07894_BGI-A2_v1.0  55 LPPGFRFHPTDEELIGYYLKRKTEGLEIEL-EVIPVIDLYKFDPWDLPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAG 136
                                 79****************************.99**************95334445667************************* PP

                         NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 yWkatgkd++v++ ++ ++g +ktLvfy+grap g +tdW+mheyrl
  Cotton_A_07894_BGI-A2_v1.0 137 YWKATGKDRKVVC-QSDVTGYRKTLVFYRGRAPLGDRTDWIMHEYRL 182
                                 *************.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-5952204IPR003441NAC domain
PROSITE profilePS5100558.70255204IPR003441NAC domain
PfamPF023658.6E-2956182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MILPFGGCIL WKLCSVLDKK SSVDKSFYFW IFQIFNTYSL LSGRFLRTFG SGASLPPGFR  60
FHPTDEELIG YYLKRKTEGL EIELEVIPVI DLYKFDPWDL PEKSFLPKRD LEWFFFCPRD  120
RKYPNGSRTN RATKAGYWKA TGKDRKVVCQ SDVTGYRKTL VFYRGRAPLG DRTDWIMHEY  180
RLSDEPSQGS PNQGAFALCR VVKRNEPKAS DARGEPKATM VGSSSTNIIL PVPRTCNSGN  240
ISCEASYPNK ESHYTSSEVM QVPRFEPVSV NTDPRGVWVS PDLILDSSKD YPQTCESTAQ  300
YFPQYEFPSS LTPWQQYEQT DFSPSSSYSN FGEIEHDDLS RIGYMSPYSG HASYMDFYGN  360
EGNDQTGLFN YMNPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-525420516166NO APICAL MERISTEM PROTEIN
1ut4_B3e-525420516166NO APICAL MERISTEM PROTEIN
1ut7_A3e-525420516166NO APICAL MERISTEM PROTEIN
1ut7_B3e-525420516166NO APICAL MERISTEM PROTEIN
3swm_A3e-525420519169NAC domain-containing protein 19
3swm_B3e-525420519169NAC domain-containing protein 19
3swm_C3e-525420519169NAC domain-containing protein 19
3swm_D3e-525420519169NAC domain-containing protein 19
3swp_A3e-525420519169NAC domain-containing protein 19
3swp_B3e-525420519169NAC domain-containing protein 19
3swp_C3e-525420519169NAC domain-containing protein 19
3swp_D3e-525420519169NAC domain-containing protein 19
4dul_A3e-525420516166NAC domain-containing protein 19
4dul_B3e-525420516166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472320.0KC847232.1 Gossypium hirsutum NAC domain protein NAC55 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636537.10.0PREDICTED: NAC domain-containing protein 86-like
SwissprotO496971e-104NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A0B0PQ220.0A0A0B0PQ22_GOSAR; NAC domain-containing 74
STRINGGorai.008G227800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21512777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-106NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]