PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07836_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 236aa    MW: 25654.7 Da    PI: 5.0652
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07836_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.54e-194089255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                 ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  Cotton_A_07836_BGI-A2_v1.0 40 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHEAAMAYDAAARKLYG 89
                                69****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.59E-223999No hitNo description
Gene3DG3DSA:3.30.730.101.3E-304098IPR001471AP2/ERF domain
PROSITE profilePS5103222.3664097IPR001471AP2/ERF domain
PfamPF008474.2E-144089IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-214097IPR016177DNA-binding domain
SMARTSM003805.7E-3540103IPR001471AP2/ERF domain
PRINTSPR003676.8E-104152IPR001471AP2/ERF domain
PRINTSPR003676.8E-106379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSTSMMGGFG ERKQIRRPAQ ASSRKGCMRG KGGPENALCT YKGVRQRTWG KWVAEIREPN  60
RGARLWLGTF DTSHEAAMAY DAAARKLYGS EAKLNLPELC VGPRYPPPST NTQAAAMGNQ  120
TQNLNNSGTC SSNSPIIIRT NDVQPVYNND SVISFPNEKI DSQGNPGGNN AKLGQNEDGI  180
DGFWENMCVN LPVLDESIWA EAAISLDFPV MDDPGSFASS LVDVTGWDAL QSPWCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-184197360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610140.11e-176PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A2P5X0241e-175A0A2P5X024_GOSBA; Uncharacterized protein
STRINGGorai.009G197800.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53992648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.16e-55ERF family protein