PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07824_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 169aa    MW: 19104.1 Da    PI: 4.7535
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07824_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.81.1e-157213170128
                         NAM  70 tgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 t+ r+ r t +gyW +tg dk++ ++ +++   lk+ L fy+g++p+++kt+W mheyrl
  Cotton_A_07824_BGI-A2_v1.0  72 TKLRPDRRTPNGYWCTTGVDKAISVEgSTNPAALKNFLDFYEGNRPDSTKTEWKMHEYRL 131
                                 567999******************98566679**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.0151147IPR003441NAC domain
SuperFamilySSF1019416.93E-2422136IPR003441NAC domain
PfamPF023651.6E-829131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MEQEHDMLCN MESSGAAVVG NDEIQLPRGN QVFPSDEFLA DCLMKRFNGE PNPDHFHDID  60
LYSKHPAQLT GTKLRPDRRT PNGYWCTTGV DKAISVEGST NPAALKNFLD FYEGNRPDST  120
KTEWKMHEYR LSDAVKNTLI NSKPRGDMTP MQGSFYPSRP NEGAFDDNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-112313112140Stress-induced transcription factor NAC1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609539.11e-102PREDICTED: NAC domain-containing protein 48-like
TrEMBLA0A2P5WJT41e-101A0A2P5WJT4_GOSBA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3552322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-16NAC domain containing protein 47